Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02430 186 / 5e-59 Protein of unknown function (DUF679) (.1) AT4G24310 169 / 1e-52 Protein of unknown function (DUF679) (.1) AT5G46090 130 / 2e-37 Protein of unknown function (DUF679) (.1) AT4G18425 128 / 1e-36 Protein of unknown function (DUF679) (.1) AT3G21550 89 / 1e-21 AtDMP2 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) AT1G09157 87 / 2e-20 Protein of unknown function (DUF679) (.1) AT3G21520 86 / 2e-20 AtDMP1 Arabidopsis thaliana DUF679 domain membrane protein 1, DUF679 domain membrane protein 1 (.1) AT5G39650 86 / 6e-20 DAU2 DUO1-activated unknown 2, Protein of unknown function (DUF679) (.1) AT5G27370 59 / 1e-10 Protein of unknown function (DUF679) (.1) AT4G28485 0 / 1 AtDMP7 Arabidopsis thaliana DUF679 domain membrane protein 7, DUF679 domain membrane protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G223500 [exp] 240 / 3e-80 AT3G02430 195 / 1e-62 Protein of unknown function (DUF679) (.1) Potri.011G058000 [exp] 147 / 4e-44 AT4G18425 247 / 8e-84 Protein of unknown function (DUF679) (.1) Potri.004G049000 [exp] 144 / 2e-42 AT4G18425 276 / 6e-95 Protein of unknown function (DUF679) (.1) Potri.017G016300 [exp] 124 / 5e-35 AT4G18425 203 / 2e-66 Protein of unknown function (DUF679) (.1) Potri.008G087000 [exp] 110 / 2e-29 AT1G09157 254 / 1e-85 Protein of unknown function (DUF679) (.1) Potri.010G168400 [exp] 103 / 1e-26 AT1G09157 223 / 2e-73 Protein of unknown function (DUF679) (.1) Potri.010G027600 [exp] 94 / 1e-23 AT3G21550 202 / 1e-66 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) Potri.013G116300 [exp] 93 / 6e-23 AT3G02430 94 / 9e-24 Protein of unknown function (DUF679) (.1) Potri.013G027200 [exp] 92 / 8e-23 AT5G27370 153 / 5e-47 Protein of unknown function (DUF679) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036581 [exp] 204 / 2e-66 AT3G02430 255 / 1e-86 Protein of unknown function (DUF679) (.1) Lus10012734 [exp] 161 / 3e-49 AT3G02430 222 / 2e-73 Protein of unknown function (DUF679) (.1) Lus10015394 [exp] 145 / 6e-43 AT4G18425 273 / 1e-93 Protein of unknown function (DUF679) (.1) Lus10013969 [exp] 144 / 2e-42 AT4G18425 274 / 5e-94 Protein of unknown function (DUF679) (.1) Lus10015396 [exp] 139 / 9e-41 AT5G46090 239 / 3e-80 Protein of unknown function (DUF679) (.1) Lus10013971 [exp] 139 / 2e-40 AT5G46090 234 / 2e-78 Protein of unknown function (DUF679) (.1) Lus10013975 [exp] 138 / 5e-40 AT4G18425 257 / 3e-87 Protein of unknown function (DUF679) (.1) Lus10013974 [exp] 136 / 1e-39 AT4G18425 238 / 1e-79 Protein of unknown function (DUF679) (.1) Lus10018635 [exp] 111 / 9e-30 AT5G46090 192 / 8e-62 Protein of unknown function (DUF679) (.1) Lus10033645 [exp] 107 / 2e-28 AT5G46090 208 / 2e-68 Protein of unknown function (DUF679) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05078 [poplar] [flax] DUF679 Protein of unknown function (DUF679)
Representative CDS sequence Show only first row Show all	>Potri.003G008600.1 pacid=42785028 polypeptide=Potri.003G008600.1.p locus=Potri.003G008600 ID=Potri.003G008600.1.v4.1 annot-version=v4.1 ATGTCTCTCAGACCAAGAACAACACCTTCCTCAAAGAAATCATCCATACCTGCTGAAATATCCACAGGAAGTTCAAGCTCGGCTACTAGCAACGATAATT ACATCAATAAGAATGAGCCTGAAACTCCAAAATCCCCATCAAGACCACCCACTTTCTCTCAAAGGGCAATCTCGCAAACCCTAACAAGTACAGCAAACCT AGCCAACCTCCTTCCCACAGGCACCCTCTTAGCATTCCAGATCCTCACCCCTATATTTACCAACAATGGTGCCTGTGATTCTGCCACAGCGCCCATGACT TCTGTCCTCCTTGCTCTCCTCGCTGTTTCTTGTTTTCTTGGCTCCTTCACGGACAGTGTCAAGTCACCAACAGATGGACAAGTCTACTATGGTTTCGCAA CCCTTAAAGGGATGTTTCTGTTTGACTGCCCGGATCCTGTTGGTTCAGGCTTGTCTGATCTGAGCAAGCTCAAGCTAAGGTTCATTGATGTGGTTCATGC AGTTTTATCAGTGCTTGTGTTTGTTGCTGTGGCTTTGAGGGATAAGAACGTTTTGAGTTGCTTTTATCCTATGCCTAAACATGAGACTCAGGAGGTTTTG GATGTCATCCCTGTTGGGATTGGTCTCATCTGCAGCTTGTTGTTTATGGCTTTCCCTACCAGAAGGCATGGGATCGGCTACCCCGTTACACCAGGCAAAT AA
AA sequence Show only first row Show all	>Potri.003G008600.1 pacid=42785028 polypeptide=Potri.003G008600.1.p locus=Potri.003G008600 ID=Potri.003G008600.1.v4.1 annot-version=v4.1 MSLRPRTTPSSKKSSIPAEISTGSSSSATSNDNYINKNEPETPKSPSRPPTFSQRAISQTLTSTANLANLLPTGTLLAFQILTPIFTNNGACDSATAPMT SVLLALLAVSCFLGSFTDSVKSPTDGQVYYGFATLKGMFLFDCPDPVGSGLSDLSKLKLRFIDVVHAVLSVLVFVAVALRDKNVLSCFYPMPKHETQEVL DVIPVGIGLICSLLFMAFPTRRHGIGYPVTPGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02430			Protein of unknown function (D...		Potri.003G008600 [exp]	0	1
AT3G05990			Leucine-rich repeat (LRR) fami...		Potri.008G150200 [exp]	2.00	0.7526
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Potri.009G164300 [exp]	2.64	0.8125
AT5G02090			unknown protein		Potri.006G090100 [exp]	8.48	0.7404
AT3G07570			Cytochrome b561/ferric reducta...		Potri.014G197500 [exp]	12.24	0.7284
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Potri.014G096000 [exp]	14.96	0.6911	Pt-ADGT.3
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Potri.002G073400 [exp]	17.66	0.7347	Pt-SCL1.2
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G037600 [exp]	19.49	0.6862
AT1G08800			Protein of unknown function, D...		Potri.019G012200 [exp]	21.21	0.6834
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Potri.003G142100 [exp]	27.11	0.7130
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Potri.010G061600 [exp]	57.28	0.7080

Compare expression of checked genes

Potri.003G008600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.