Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49960 1141 / 0 unknown protein AT5G02940 183 / 1e-47 Protein of unknown function (DUF1012) (.1) AT5G43745 179 / 3e-46 Protein of unknown function (DUF1012) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G223400 [exp] 1508 / 0 AT5G49960 1134 / 0.0 unknown protein Potri.013G128100 [exp] 998 / 0 AT5G49960 927 / 0.0 unknown protein Potri.019G097000 [exp] 989 / 0 AT5G49960 907 / 0.0 unknown protein Potri.008G160700 [exp] 191 / 4e-50 AT5G43745 1008 / 0.0 Protein of unknown function (DUF1012) (.1) Potri.010G078600 [exp] 187 / 6e-49 AT5G43745 966 / 0.0 Protein of unknown function (DUF1012) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035805 [exp] 1365 / 0 AT5G49960 1146 / 0.0 unknown protein Lus10036585 [exp] 1239 / 0 AT5G49960 1029 / 0.0 unknown protein Lus10013455 [exp] 991 / 0 AT5G49960 936 / 0.0 unknown protein Lus10041014 [exp] 792 / 0 AT5G49960 749 / 0.0 unknown protein Lus10041011 [exp] 645 / 0 AT5G49960 605 / 0.0 unknown protein Lus10039407 [exp] 182 / 1e-47 AT5G43745 1019 / 0.0 Protein of unknown function (DUF1012) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0582 [poplar] [flax] TrkA_C PF06241 [poplar] [flax] Castor_Poll_mid Castor and Pollux, part of voltage-gated ion channel
Representative CDS sequence Show only first row Show all	>Potri.003G008800.1 pacid=42785876 polypeptide=Potri.003G008800.1.p locus=Potri.003G008800 ID=Potri.003G008800.1.v4.1 annot-version=v4.1 ATGGCAGACATAAAGAAAGACTCCGTCTCACCACCGCCACAACCACCACCGTCACTGCCACCAACAAGAAATGACGACGTCGACTCCAGGAAGGCATCAG AAAGACCGCTTCTCAAGAAGACAAAGACCACTTCTTCCTCCATACCAGATGACACTCACTTCCCTGGCCCGCTATTTCCCGCTGTTCGCAGAACTGCTCC TCCACCACTAACACCTTCCACCCACCACCACCTCCGCCCTCCACTGTCCGATCTCCGTCTCTCCACAAACAGCAACAACCACACCACTGTTAATGCTACT AATAGTAGCATTGATATTAGTAGTAGTAGCAACAATTCCAGCTTCTCGGTTGATAGGGACTGGATGTACCCATCTTTTCTTGGGCCCCACGTGGCTAGGA GTCGAGTCACGGTGAAGGGTCGCCGTGGTTATAATAAGGTGGCGGCGGAGGCGGAGGCGGAGGAGAAGGAGAAGCACAACACTGGGGCGACGCCCTCTTC TATTACTACTAGTACCGATGCTAGTGCTGCTAATAAGGGGAAAGTGAAAGAGGAGAAGTTATTGAAGGTAGATGATGATATTAAAGAAGTGAAAACGGCT GCTGCCACTCAAGTTCTGGTGACTCGCTCTGGTGTCAACAGAAGTCGGGGATTCAAATCTTCTTCAATCTTTTATTTGCTTAATTTCACTTGTACAGTAT TTATGTCTTTTTCGATTTACTTGAGCAATAAAGTCGCGAAACTAGAGGAAGAGAATATTAACCTCCGTACAGTGTGTAGTAATAAAGGCGGTGGTGGTAA TGACGGCATTGAAGTTTTGCAGCCTGAAGATTATAGTTCATTTTATCTTGGAAATGCTGACAGCAGAACTGTTGCTTTGTATACTGTGATGTTCACACTC GCCATACCTTTTTTGTTGTATAAATATCTTGATTATCTTCCCCAAATAAAGACTCTCTCAAAAAGAACAATGAATAACAAGGAGGAGGCTCCCCTGAAGA AGAGAGTTGCATATATGGTGGATGTTTGCTTCTCTGTTTATCCCTATGCAAAGCTACTTGCACTGCTTTTTGCGACCATCTTTCTCATAGGATTTGGTGG GTTAGCACTGTATGCTGTCAGTGATGGTAGCTTGGCGGAAGCTCTTTGGCTTTCATGGACATTTGTAGCTGATTCAGGAAATCACGCTGATAGGGTTGGC ACCGGGCCAAGAATTGTTTCTGTCTCTATAAGTTCAGGAGGCATGCTGATATTTGCCATGATGCTTGGACTTGTCTCGGATGCTATCTCAGAAAAGGTAG ATTCGCTGCGGAAAGGAAAGAGCGAAGTAATCGAAAAGAACCATATACTAATTCTTGGATGGAGTGACAAATTGGGCTCACTTTTGAAGCAGCTAGCAAT AGCAAACAAGAGCATTGGTGGTGGTGTTATAGTTGTACTAGCAGAGAGAGACAAGGAAGAAATGGAGATGGATATAGCGAAGCTCGAATTTGACTTCATG GGCACTTCTGTTATATGCAGAAGTGGTAGTCCTCTTATCCTGGCTGACTTAAAGAAAGTTTCAGTATCAAAGGCACGTGCTATTATTGTATTAGCATCTG ATGAGAATGCAGATCAGAGTGATGCACGTGCCTTAAGGGTTGTTCTCAGTCTAACAGGAGTTAAAGAGGGTTTGAGGGGTCATGTGGTTGTGGAGATGAG TGACCTTGACAATGAACCTCTAGTGAAGCTTGTTGGAGGGGAACTCATTGAAACAGTTGTTGCACATGACGTTATTGGACGCTTGATGATTCAGTGTGCT CTGCAACCAGGCCTTGCACAGATCTGGGAAGATATACTGGGGTTTGAGAATGCAGAGTTCTACATCAAAAGGTGGCCTCAATTGGATGGTCTGCTTTTTC AAGATGTGCTCATTTCATTTCCTGAAGCAATTCCCTGTGGAGTTAAGGTTGCAGCTGAAGGTGGAAAGATAAAATTAAATCCTGATGATAACTATGCTCT AAAAGAAGGAGATGAGATTCTTGTTATAGCCGAGGATGATGACACCTACGCTCCAGGTCCTCTTCCAGAGGTATGTCGAAGTTCTTGTCCGAAAACAATG GATCCTCCAAAATATCCAGAGAAGATACTGTTCTGTGGCTGGCGACGTGACATTGATGACATGATAATGGTTCTGGAAGCTTTACTTGCTCCAGGTTCGG AACTGTGGATGTTCAATGAGGTCCCAGAAAAGGAGAGAGAAAAGAAGCTTACTGATGGCGGACTTGATATTCATGGATTAGAGAACATAACACTTGTCCA TCGTGAGGGAAACGCTGTCATCAAACGACATTTGGAGAATCTTCCTCTTGAGACTTTTGATTCTATATTAATTCTTGCAGATGAGTCATTGGAAGATTCC ATTGTGCATTCTGACTCCAGATCTCTTGCTACCCTTCTCCTTATTCGAGATATACAGTTAAAGCGTCTCCCTCACAGAGATGCAAAGCCAACTTCTTTAC GGATTTCTGGGTTCTCTCATAGCTCATGGATCCGTGAAATGCAACAAGCATCGGATAAATCAATAATTATTAGTGAAATCTTAGATTCTAGGACTAGAAA CCTTGTCTCAGTGTCCCGAATCAGTGATTATGTGCTATCAAATGAGCTGGTAAGCATGGCACTTGCAATGGTTGCTGAAGACAAGCAAATAAATCGTGTT CTTGAGGAGCTTTTTGCAGAGGAGGGCAATGAGATGTGCATTAAACCAGCAGAATTTTACCTATTCGATCAAGAAGAGATTCCTTTTTATGAGATTATGA TTAGGGGTCGTCAAAGAAATGAAATTGTGATCGGTTATCGCCTTGCTAATGCAGAGCGTGCCATTATTAACCCTCCTGAAAAGTCAGAACCAAGAAAATG GTCCCTTGATGATGTTTTTGTTGTCATCTCTTTGGGTGACTGA
AA sequence Show only first row Show all	>Potri.003G008800.1 pacid=42785876 polypeptide=Potri.003G008800.1.p locus=Potri.003G008800 ID=Potri.003G008800.1.v4.1 annot-version=v4.1 MADIKKDSVSPPPQPPPSLPPTRNDDVDSRKASERPLLKKTKTTSSSIPDDTHFPGPLFPAVRRTAPPPLTPSTHHHLRPPLSDLRLSTNSNNHTTVNAT NSSIDISSSSNNSSFSVDRDWMYPSFLGPHVARSRVTVKGRRGYNKVAAEAEAEEKEKHNTGATPSSITTSTDASAANKGKVKEEKLLKVDDDIKEVKTA AATQVLVTRSGVNRSRGFKSSSIFYLLNFTCTVFMSFSIYLSNKVAKLEEENINLRTVCSNKGGGGNDGIEVLQPEDYSSFYLGNADSRTVALYTVMFTL AIPFLLYKYLDYLPQIKTLSKRTMNNKEEAPLKKRVAYMVDVCFSVYPYAKLLALLFATIFLIGFGGLALYAVSDGSLAEALWLSWTFVADSGNHADRVG TGPRIVSVSISSGGMLIFAMMLGLVSDAISEKVDSLRKGKSEVIEKNHILILGWSDKLGSLLKQLAIANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFM GTSVICRSGSPLILADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCA LQPGLAQIWEDILGFENAEFYIKRWPQLDGLLFQDVLISFPEAIPCGVKVAAEGGKIKLNPDDNYALKEGDEILVIAEDDDTYAPGPLPEVCRSSCPKTM DPPKYPEKILFCGWRRDIDDMIMVLEALLAPGSELWMFNEVPEKEREKKLTDGGLDIHGLENITLVHREGNAVIKRHLENLPLETFDSILILADESLEDS IVHSDSRSLATLLLIRDIQLKRLPHRDAKPTSLRISGFSHSSWIREMQQASDKSIIISEILDSRTRNLVSVSRISDYVLSNELVSMALAMVAEDKQINRV LEELFAEEGNEMCIKPAEFYLFDQEEIPFYEIMIRGRQRNEIVIGYRLANAERAIINPPEKSEPRKWSLDDVFVVISLGD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49960			unknown protein		Potri.003G008800 [exp]	0	1
AT5G48570		ROF2, ATFKBP65	FKBP-type peptidyl-prolyl cis-...		Potri.002G117200 [exp]	1.00	0.8979
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.006G242200 [exp]	2.00	0.8659
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Potri.018G132500 [exp]	2.23	0.8287
AT1G04120		ATABCC5, ABCC5,...	MULTIDRUG RESISTANCE PROTEIN 5...		Potri.014G193400 [exp]	3.46	0.8507	Pt-MRP5.2
AT2G39140		PDE328, SVR1	SUPPRESSOR OF VARIEGATION 1, P...		Potri.010G226901 [exp]	5.65	0.8033
AT3G42670		CLSY1, CLSY, CH...	CLASSY 1, CLASSY1, chromatin r...		Potri.010G183832 [exp]	9.79	0.8152
AT5G10830			S-adenosyl-L-methionine-depend...		Potri.005G067500 [exp]	10.90	0.8058
AT1G35660			unknown protein		Potri.019G083100 [exp]	15.36	0.8315
AT1G34270			Exostosin family protein (.1)		Potri.013G116200 [exp]	17.43	0.7491
AT3G57570			ARM repeat superfamily protein...		Potri.006G054100 [exp]	19.49	0.7673

Compare expression of checked genes

Potri.003G008800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.