Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32630 613 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G05670 271 / 3e-81 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT5G39710 263 / 2e-78 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G28050 253 / 3e-77 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 251 / 6e-75 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G06710 255 / 8e-74 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G19290 254 / 1e-73 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 243 / 5e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 243 / 1e-71 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 243 / 1e-71 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G035700 [exp] 284 / 3e-86 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.014G040200 [exp] 282 / 7e-84 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G032600 [exp] 268 / 4e-81 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.009G105600 [exp] 259 / 6e-77 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G038400 [exp] 256 / 6e-77 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 256 / 8e-77 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.016G025600 [exp] 256 / 3e-76 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050400 [exp] 254 / 4e-76 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.015G105400 [exp] 261 / 1e-75 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042016 [exp] 725 / 0 AT2G32630 600 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10018019 [exp] 721 / 0 AT2G32630 590 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10008185 [exp] 279 / 1e-82 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 262 / 4e-77 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 248 / 1e-72 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013283 [exp] 244 / 4e-72 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10027914 [exp] 241 / 5e-70 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034616 [exp] 240 / 8e-70 AT1G22960 617 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012037 [exp] 238 / 1e-69 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026747 [exp] 243 / 4e-69 AT1G06710 1190 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.003G008900.9 pacid=42786301 polypeptide=Potri.003G008900.9.p locus=Potri.003G008900 ID=Potri.003G008900.9.v4.1 annot-version=v4.1 ATGGCTACACAGAAATTGTTGCAGACATTCAAGAAAACACCCATTACTGCAAGCCCCACTTCATTATCTAATTCAGAATTGGCACAAAAGATTGCTAAAA CCCTAATCAAAGCTGGCCTAAAACCCTTCGAAACAACCAACTCATCTTTGCTTTCCAACCTAGATTCTCACATAACCAACCTTGTTTTCTCCAACCCAAA TGTCCCACTTCATTCTTGCTTGAATTTCTTCAACTTTTTGCGAAAAAATCAATCCTTTGTTTCTCATAAACCTGATCTTCAATCCCATCTAAGCGTTGTT TTTAGATTGTTCAAGGCTAGAAGGTTTGCAGAAATGAAAAGAGTTTTGACTTATGTTGCTATGGATAGTAATCTTAGATGCCCGGTTGCAAATCTTGTTT CTTTGGTTGAAGAGAGTGGATTTAATAATGAACCCAACTTTGTGGAGAAGTTGTGTGATATGCTGTTTAGGGTTTATGCCGATTGTAATTTGTTTGAAGA GGGTTTTCGGGTTTTTGATTATATGGTGAGCTATGAGTTAAAGATTGATGATAGGTCTTGTATTGTGTTTTTGCTTGCATTGAAGAGGTGTGATAAAATG GAGGCTTGTTTGGGTCTTTTTAAAAGAATGGTTGAGTTTAATGTGGAGGTTACAGTTTATTCTTTGACGATTGTGATTGATGGGTTGTGTAAGAGACGAA GGGTTAAAAGGGCTATCGATTTGATGATTGAAATGGCTAGCAAAGGGATTAAACCGAATGTTGTTACATATAACACACTTATAAATGCATATATTAAGAG AACGGATTTTGATGGTGTTAATGAGATGTTGAGATTGATGGAAGTGGATGAAGTTGCATTTAATGTGGCTACATATACTCTTTTGATTGACTGGCATGGT AGTTCTGGTAAGATCGACGAAGTTGAGAGGATGTTTGAAGAAATGTGTGAGAAAGGGATTAAAGCAGATATTCATGTTTATACTGTGGTCATTAATTGGA ACTGTAAAATTGGAAATACAAAAAGGGCATTTGCCTTGTTTGATGAGTTGACTGAGAAAGGCCTTGTTGCCAATGTTCACACATATGGAGCATTGATTGA TGGTGTTTGCAAGGCTGGTGAAATGGAGGCAGCTGAGATATTGGTGAATGAGATGCAAACCCGAGGGCTTGATGTCAATCAACTGATATATAATACGCTT ATAGATGGTTATTGCAAAAGGGGGTTGATAGATGAAGCTTTTAAGGTGCAAGTCATAATGGAGAAGAAAGGATTTGAGAATGATATCTATACTCTTAACA CTATTGCTGATGGGTTACGTAAATTGAACCAGCCTGAAGAAGCAAAGAGGTGGTTACTTACAATGATTGAAAAGGGCGTGGTTCCTAATGTTGTCAGCTA TACCACTTTAATTGACATATATTGCAAGGAAGGGAATTTTGTGGAAGCAAAGAAACTGTTTCAAGAAATGAAGAAAGCGGGGGGAGAGCCTAATGCTGTT ACATACAATGTTCTAATTGATGGGCACAGCAAGAAAGGTAGGATGAAGGAAGCTTATGAGCTAAGAGATGAAATGAGAGCAAAAGGGATATTCCCAGACA TATATACTTACACATCACTTTTGCATGGAGAATGCATTTTTGGGAAGCTGGATGATGCAGTGGAACTCTTCAATGAAGTGCGCCAAAAGGGCTTACCTCT CAATGTAGTCACTTATACAGCAATAATTTCAGGCTTGTCCAAGGAAGGAAGATCTGAAGAAGCATTCAAGTTGTATGATGAGATGACAGAGGCAGGTCTT ACACCTGATGATAGAGTCTATACTTCACTTGTCAGCAGCCTTCACAAAGCATAG
AA sequence Show only first row Show all	>Potri.003G008900.9 pacid=42786301 polypeptide=Potri.003G008900.9.p locus=Potri.003G008900 ID=Potri.003G008900.9.v4.1 annot-version=v4.1 MATQKLLQTFKKTPITASPTSLSNSELAQKIAKTLIKAGLKPFETTNSSLLSNLDSHITNLVFSNPNVPLHSCLNFFNFLRKNQSFVSHKPDLQSHLSVV FRLFKARRFAEMKRVLTYVAMDSNLRCPVANLVSLVEESGFNNEPNFVEKLCDMLFRVYADCNLFEEGFRVFDYMVSYELKIDDRSCIVFLLALKRCDKM EACLGLFKRMVEFNVEVTVYSLTIVIDGLCKRRRVKRAIDLMIEMASKGIKPNVVTYNTLINAYIKRTDFDGVNEMLRLMEVDEVAFNVATYTLLIDWHG SSGKIDEVERMFEEMCEKGIKADIHVYTVVINWNCKIGNTKRAFALFDELTEKGLVANVHTYGALIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTL IDGYCKRGLIDEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGVVPNVVSYTTLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAV TYNVLIDGHSKKGRMKEAYELRDEMRAKGIFPDIYTYTSLLHGECIFGKLDDAVELFNEVRQKGLPLNVVTYTAIISGLSKEGRSEEAFKLYDEMTEAGL TPDDRVYTSLVSSLHKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32630			Pentatricopeptide repeat (PPR-...		Potri.003G008900 [exp]	0	1
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Potri.011G024800 [exp]	1.73	0.9373
AT5G18440		AtNUFIP	nuclear FMRP-interacting prote...		Potri.008G012250 [exp]	2.00	0.9413
AT4G16280		FCA	RNA binding;abscisic acid bind...		Potri.010G147900 [exp]	2.00	0.9353
AT3G26850			histone-lysine N-methyltransfe...		Potri.006G227200 [exp]	4.58	0.9170
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Potri.002G080600 [exp]	5.19	0.9131
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.008G003600 [exp]	5.65	0.9157
AT5G18390			Pentatricopeptide repeat (PPR)...		Potri.019G025700 [exp]	6.00	0.9241
AT5G48385			FRIGIDA-like protein (.1)		Potri.015G110132 [exp]	6.24	0.9054
AT4G25880		APUM6	pumilio 6 (.1.2.3)		Potri.006G165100 [exp]	8.77	0.9101	Pt-PPD1.4
AT1G74120			Mitochondrial transcription te...		Potri.018G051600 [exp]	8.83	0.8912

Compare expression of checked genes

Potri.003G008900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.