Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49940 280 / 8e-96 ATCNFU2, NFU2 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2) AT4G25910 214 / 4e-70 ATCNFU3, NFU3 NFU domain protein 3 (.1) AT4G01940 99 / 6e-25 ATCNFU1, NFU1 NFU domain protein 1 (.1) AT3G20970 54 / 3e-08 ATNFU2, NFU4 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2) AT1G51390 52 / 7e-08 ATNFU1, NFU5 NFU domain protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G222600 [exp] 377 / 3e-134 AT5G49940 293 / 3e-101 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2) Potri.006G165600 [exp] 217 / 4e-71 AT4G25910 300 / 3e-104 NFU domain protein 3 (.1) Potri.002G192200 [exp] 103 / 6e-27 AT4G01940 263 / 1e-89 NFU domain protein 1 (.1) Potri.014G117700 [exp] 100 / 6e-26 AT4G01940 248 / 1e-83 NFU domain protein 1 (.1) Potri.010G237400 [exp] 57 / 1e-09 AT3G20970 366 / 2e-128 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015481 [exp] 302 / 1e-104 AT5G49940 286 / 3e-98 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2) Lus10001439 [exp] 207 / 4e-67 AT4G25910 263 / 2e-89 NFU domain protein 3 (.1) Lus10001634 [exp] 207 / 7e-66 AT4G25910 260 / 7e-87 NFU domain protein 3 (.1) Lus10009999 [exp] 107 / 5e-28 AT4G01940 257 / 8e-87 NFU domain protein 1 (.1) Lus10034140 [exp] 51 / 1e-07 AT3G20970 369 / 3e-131 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2) Lus10043440 [exp] 50 / 3e-07 AT3G20970 383 / 1e-134 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0232 [poplar] [flax] NifU PF01106 [poplar] [flax] NifU NifU-like domain
Representative CDS sequence Show only first row Show all	>Potri.003G009300.1 pacid=42784562 polypeptide=Potri.003G009300.1.p locus=Potri.003G009300 ID=Potri.003G009300.1.v4.1 annot-version=v4.1 ATGCAATCGGTGGTGTTGAACCCAACTTGCTACTGCAGGGCTCAACAAGGCCTAGACACCTCCTGCAGCTCTCCTCCCCCTCCTGCTATTCTTTACAAGA GTCGTTCGAGCTTTTTTGGTACCCATTCGAGGAGCCCCGGTCACCTGCGGCGAGGCATACCTTGCCGTTCCTTGCGAATTCGATCGCCTTCTTTCACACG GAGGAGGCCAGTTGTTAAGGCTGTTGCTACTCCAGATTCAGCGGTAGAATTGCCGTTGACTGCAGACAATGTTGAGAGTGTATTGGATGAGGTTAGACCT TACCTGATTTCAGATGGTGGTAATGTGGCATTGCATGAGATTGATGGAAATGTTGTCCGATTGAAATTACAAGGAGCATGTAGTTCTTGTTCTGCTTCGG TTATGACGATGAAGATGGGTATTGAGCGTCGCTTAATGGAAAAGATTCCTGAGATAGTTGCAGTAGAAGCTGTAGCGGATGAAGAAACTGGGCTTGAGCT GAACGGAGAGAATATAGAGAAGGTACTGGAAGAAATAAGGCCATACCTTGTTGGGGCAGCAGGAGGATCTCTTGAACTAGTGGCAATTGAGGAACCAATA GTTAAAGTCCGATTAACAGGGCCAGCAGCTGGGGTCATGACTGTACGAGTGGCTGTCACCCAGAAATTACGCGAGAAAATTCCAGCCATTGCTGCAGTTC AACTCCTATGA
AA sequence Show only first row Show all	>Potri.003G009300.1 pacid=42784562 polypeptide=Potri.003G009300.1.p locus=Potri.003G009300 ID=Potri.003G009300.1.v4.1 annot-version=v4.1 MQSVVLNPTCYCRAQQGLDTSCSSPPPPAILYKSRSSFFGTHSRSPGHLRRGIPCRSLRIRSPSFTRRRPVVKAVATPDSAVELPLTADNVESVLDEVRP YLISDGGNVALHEIDGNVVRLKLQGACSSCSASVMTMKMGIERRLMEKIPEIVAVEAVADEETGLELNGENIEKVLEEIRPYLVGAAGGSLELVAIEEPI VKVRLTGPAAGVMTVRVAVTQKLREKIPAIAAVQLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49940		ATCNFU2, NFU2	CHLOROPLAST-LOCALIZED NIFU-LIK...		Potri.003G009300 [exp]	0	1
AT4G03410			Peroxisomal membrane 22 kDa (M...		Potri.019G103200 [exp]	1.00	0.9589
AT4G11570			Haloacid dehalogenase-like hyd...		Potri.001G104366 [exp]	2.00	0.9545
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Potri.001G258100 [exp]	6.70	0.9471
AT1G50020			unknown protein		Potri.009G084800 [exp]	8.12	0.9462
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G135001 [exp]	8.36	0.9455
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Potri.016G016900 [exp]	10.48	0.9381
AT3G54680			proteophosphoglycan-related (....		Potri.013G120700 [exp]	10.58	0.9209
AT2G32540		ATCSLB4, ATCSLB...	CELLULOSE SYNTHASE LIKE B4, ce...		Potri.002G227300 [exp]	10.77	0.9518	ATCSLB05.1
AT4G24000		ATCSLG2	ARABIDOPSIS THALIANA CELLULOSE...		Potri.010G074800 [exp]	10.95	0.9440
AT5G09830			BolA-like family protein (.1)		Potri.001G309200 [exp]	12.00	0.9365

Compare expression of checked genes

Potri.003G009300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.