Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58070 48 / 1e-06 unknown protein AT1G75720 46 / 4e-06 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2) AT3G51220 45 / 1e-05 Plant protein of unknown function (DUF827) (.1) AT2G17940 42 / 0.0001 Plant protein of unknown function (DUF827) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G021000 [exp] 273 / 1e-93 AT1G75720 42 / 8e-05 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2) Potri.004G222800 [exp] 239 / 9e-80 AT1G58070 60 / 1e-10 unknown protein Potri.002G023000 [exp] 49 / 5e-07 AT1G75720 108 / 2e-29 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2) Potri.005G114400 [exp] 47 / 2e-06 AT2G17940 111 / 2e-30 Plant protein of unknown function (DUF827) (.1) Potri.005G238500 [exp] 44 / 2e-05 AT1G75720 82 / 3e-19 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015482 [exp] 86 / 1e-19 AT1G58070 108 / 6e-28 unknown protein Lus10019953 [exp] 81 / 9e-18 AT1G58070 99 / 3e-24 unknown protein Lus10024335 [exp] 47 / 4e-06 AT1G75720 117 / 8e-33 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2) Lus10028461 [exp] 46 / 7e-06 AT2G17940 104 / 3e-27 Plant protein of unknown function (DUF827) (.1) Lus10041916 [exp] 42 / 0.0002 AT2G17940 102 / 2e-26 Plant protein of unknown function (DUF827) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G009400.1 pacid=42785707 polypeptide=Potri.003G009400.1.p locus=Potri.003G009400 ID=Potri.003G009400.1.v4.1 annot-version=v4.1 ATGGAAACCCCTACTCTTTCTCCAAAACCAGCAAAAGACTACAGCTCCTCGGTTGACACTTCTCGCCCATTTCGATCAGTCAAAGAAGCTGTTGCCATCT TCGGCAAGCGGATTCTCGTAGGAGAAATATACTCTTCGAAGCCTTATTATAATCCTCCTGGAGAAGAAAATATTTCATGGAGGTTCTTATCACCAAGTCC TAGCTACAGAAGCCCTAAAGAAGATCATCATCATGAACAAAATGAGGTCTTTGGTGCTCTAATGAAACTTGAGGCTGAACTTAAGGAAACAAAGACTGAA CTGAAGTTGCTAAAGGAGAGAGAGTCCGAGACTGAAATTGCACTGGCTTCTTTGAATGCCGAGCTTCACAAGAATATGTCTAAGTTGGCTAGGGCAGAGG CAGCTGCAGCTAAAGAGGCGGTAGAGATGAAAGCGGTGAGTTTTGAGAGGGAAAAGAAGGAAGATCTTCTTCTTAAAGAGGAAGAAAGGATGAGAGAATT GATGATAAGAATGGAGAATTCTCCAACCTTGGCTCAAATATTGAGTCTTGGGGAGGAGAAAGAGTGCTTCAGAGGAAAGGAGGAGAGGAAGGCAATGAAA AAGAAGCCTATTGTTCCTCTTGTGGGAGACTTGTTTTTCAAGAAAAAAGGATCATCTAATACTCTTAATAACCCTCTATATGCATCTCCTGAAGTGTGTT TTAATTGA
AA sequence Show only first row Show all	>Potri.003G009400.1 pacid=42785707 polypeptide=Potri.003G009400.1.p locus=Potri.003G009400 ID=Potri.003G009400.1.v4.1 annot-version=v4.1 METPTLSPKPAKDYSSSVDTSRPFRSVKEAVAIFGKRILVGEIYSSKPYYNPPGEENISWRFLSPSPSYRSPKEDHHHEQNEVFGALMKLEAELKETKTE LKLLKERESETEIALASLNAELHKNMSKLARAEAAAAKEAVEMKAVSFEREKKEDLLLKEEERMRELMIRMENSPTLAQILSLGEEKECFRGKEERKAMK KKPIVPLVGDLFFKKKGSSNTLNNPLYASPEVCFN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G58070			unknown protein		Potri.003G009400 [exp]	0	1
AT5G55810		ATNMNAT	nicotinate/nicotinamide mononu...		Potri.013G021900 [exp]	4.24	0.9349
					Potri.014G121801 [exp]	4.89	0.9214
					Potri.001G355650 [exp]	6.00	0.9281
AT1G32310			unknown protein		Potri.001G138700 [exp]	9.16	0.8967
AT5G01340		AtmSFC1	mitochondrial succinate-fumara...		Potri.016G119650 [exp]	12.84	0.8995
					Potri.006G273732 [exp]	14.00	0.9210
					Potri.004G095250 [exp]	15.09	0.7843
AT2G01300			unknown protein		Potri.004G093100 [exp]	16.79	0.7952
AT3G27640			Transducin/WD40 repeat-like su...		Potri.001G345400 [exp]	22.97	0.8396
AT4G16070			Mono-/di-acylglycerol lipase, ...		Potri.008G211200 [exp]	23.49	0.8221

Compare expression of checked genes

Potri.003G009400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.