Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15220 201 / 2e-67 Ribosomal protein L27 family protein (.1) AT2G16930 199 / 2e-66 Ribosomal protein L27 family protein (.1.2.3) AT5G40950 88 / 2e-22 RPL27 ribosomal protein large subunit 27 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G329500 [exp] 96 / 2e-25 AT5G40950 253 / 2e-86 ribosomal protein large subunit 27 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007170 [exp] 229 / 1e-78 AT5G15220 190 / 3e-63 Ribosomal protein L27 family protein (.1) Lus10010822 [exp] 228 / 4e-78 AT5G15220 191 / 3e-63 Ribosomal protein L27 family protein (.1) Lus10041553 [exp] 97 / 7e-26 AT5G40950 241 / 2e-81 ribosomal protein large subunit 27 (.1) Lus10012538 [exp] 96 / 4e-25 AT5G40950 243 / 2e-82 ribosomal protein large subunit 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01016 [poplar] [flax] Ribosomal_L27 Ribosomal L27 protein
Representative CDS sequence Show only first row Show all	>Potri.003G009500.2 pacid=42787362 polypeptide=Potri.003G009500.2.p locus=Potri.003G009500 ID=Potri.003G009500.2.v4.1 annot-version=v4.1 ATGATGAATTTTACAACGATATTGTGCAAACGTTTGACTGTGAAGGAACTGGTCACCAATGTCCCCGTCTATGAAAGCATTGCTGATGGGTCTTCTGGTG GATTAAGCTTGATGTTTAGACGTTGGGCTACCAAAAAACAAGCTGGGTCCACAAAGAATGGACGGGATTCGAAACCTAAGAACCTAGGGGTCAAGAAATT TGGTGGAGAGAGGGTTATACCTGGAAATATCATAGTTCGGCAACGAGGCACTCGTTTTCATCCTGGAGACTATGTTGGGATGGGGAAAGATCACACGCTT TTTGCCTTGAAGGAAGGAAATGTGAAGTTTGAAACAAACAAGCTTACAGGCCGCAAATGGGTGCATGTGGAGCCTAAGTATGGATATGAGCTCCATCCTA TTTACACAAAAGCAAGTGGTGATTCAGCACAGGTGACAACAGCCTCATGA
AA sequence Show only first row Show all	>Potri.003G009500.2 pacid=42787362 polypeptide=Potri.003G009500.2.p locus=Potri.003G009500 ID=Potri.003G009500.2.v4.1 annot-version=v4.1 MMNFTTILCKRLTVKELVTNVPVYESIADGSSGGLSLMFRRWATKKQAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTL FALKEGNVKFETNKLTGRKWVHVEPKYGYELHPIYTKASGDSAQVTTAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15220			Ribosomal protein L27 family p...		Potri.003G009500 [exp]	0	1
AT1G04630		MEE4	maternal effect embryo arrest ...		Potri.003G173800 [exp]	9.05	0.8415
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.015G126301 [exp]	14.21	0.8314
AT1G71950			Proteinase inhibitor, propepti...		Potri.019G083300 [exp]	20.44	0.7542
AT1G67785			unknown protein		Potri.015G087301 [exp]	21.90	0.8158
AT1G77370			Glutaredoxin family protein (....		Potri.007G017300 [exp]	32.18	0.7546	PtrcGrx_C3
AT3G50845			Protein of unknown function (D...		Potri.005G123100 [exp]	35.49	0.7725
					Potri.013G156300 [exp]	35.58	0.8065
AT1G29990		PFD6, PDF6	prefoldin 6 (.1)		Potri.004G131900 [exp]	35.66	0.7833
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Potri.003G218700 [exp]	38.72	0.7271
AT2G25310			Protein of unknown function (D...		Potri.018G024600 [exp]	42.89	0.7691

Compare expression of checked genes

Potri.003G009500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.