Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25880 725 / 0 APUM6 pumilio 6 (.1.2.3) AT3G20250 660 / 0 APUM5 pumilio 5 (.1) AT2G29190 475 / 8e-152 APUM2 pumilio 2 (.1.2) AT2G29200 474 / 1e-151 APUM1 pumilio 1 (.1) AT2G29140 469 / 8e-150 APUM3 pumilio 3 (.1) AT3G10360 455 / 6e-144 APUM4 pumilio 4 (.1) AT1G22240 194 / 4e-53 APUM8 pumilio 8 (.1) AT1G78160 196 / 7e-53 APUM7 pumilio 7 (.1) AT5G56510 179 / 3e-47 APUM12 pumilio 12 (.1) AT4G08840 168 / 6e-44 APUM11 pumilio 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G165100 [exp] 1548 / 0 AT4G25880 742 / 0.0 pumilio 6 (.1.2.3) Potri.008G004300 [exp] 804 / 0 AT3G20250 783 / 0.0 pumilio 5 (.1) Potri.010G201100 [exp] 496 / 7e-160 AT2G29200 923 / 0.0 pumilio 1 (.1) Potri.009G034900 [exp] 491 / 6e-157 AT2G29190 1055 / 0.0 pumilio 2 (.1.2) Potri.008G058300 [exp] 488 / 1e-156 AT2G29200 863 / 0.0 pumilio 1 (.1) Potri.001G243400 [exp] 489 / 5e-156 AT2G29190 1071 / 0.0 pumilio 2 (.1.2) Potri.008G036500 [exp] 457 / 3e-144 AT3G10360 907 / 0.0 pumilio 4 (.1) Potri.010G225600 [exp] 450 / 6e-142 AT3G10360 868 / 0.0 pumilio 4 (.1) Potri.003G222300 [exp] 210 / 9e-57 AT5G56510 497 / 4e-168 pumilio 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034808 [exp] 852 / 0 AT3G20250 880 / 0.0 pumilio 5 (.1) Lus10033353 [exp] 749 / 0 AT3G20250 732 / 0.0 pumilio 5 (.1) Lus10016513 [exp] 493 / 1e-157 AT2G29190 1083 / 0.0 pumilio 2 (.1.2) Lus10000516 [exp] 468 / 7e-157 AT2G29200 638 / 0.0 pumilio 1 (.1) Lus10002708 [exp] 486 / 5e-156 AT2G29200 1009 / 0.0 pumilio 1 (.1) Lus10040782 [exp] 486 / 6e-155 AT2G29190 1095 / 0.0 pumilio 2 (.1.2) Lus10001567 [exp] 481 / 7e-155 AT2G29200 977 / 0.0 pumilio 1 (.1) Lus10004976 [exp] 481 / 3e-154 AT2G29200 971 / 0.0 pumilio 1 (.1) Lus10037976 [exp] 464 / 2e-147 AT3G10360 941 / 0.0 pumilio 4 (.1) Lus10038706 [exp] 458 / 4e-145 AT3G10360 928 / 0.0 pumilio 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00806 [poplar] [flax] PUF Pumilio-family RNA binding repeat CL0020 [poplar] [flax] PF07990 [poplar] [flax] NABP Nucleic acid binding protein NABP
Representative CDS sequence Show only first row Show all	>Potri.003G009900.8 pacid=42787508 polypeptide=Potri.003G009900.8.p locus=Potri.003G009900 ID=Potri.003G009900.8.v4.1 annot-version=v4.1 ATGGCCACAGAGAGTCCACTTAGAATGCCCTCCCATGAGTCAGCAACTTTTGTTCCATCAACTCCTAATATGGCAGTGGAGGATTTGGGATTTCTTAGAA ACGGTCAAAGATTCCGTGGCAGTGGGGGAGATGCAGTCCCTAATCGAAGTGGAAGTGCACCCCCAAGCATGGAAGGCTCCTTTTTCGCAATAAATAACCT CATTTCTCAGCAAAATTCCAACCTTAATCCTAGGCTGGGGAGTTCAAACAATGCTCTTCTAGCTTTCAACTCAGAGAAGCAGTCATATCTATCTTATTAT GGTACCGGTGCCAGCCCCAACCTCAGACTTCCTACACCACCCATCCCAAGGGAGAATCAGCATCCGGGACGCCATGCTGTTAAGTTTGGCACTAATTGGG GATTGGCTCCAATAGATGACAACAGTAAAAACTCCTTGCATTTGTCGCAAGGATTACTTTCTACACACAAGGAAGAGTTGGAGGGTGACCACTCACCCAA GGAGCCCTTAGACAGTTTAGCCAACATGACAAATGGGTTTTGGTCTGGAGGTGATGCTGCTCCATTGGCAGGGCAATCCAAACGCTTGGTTGATATAATT CAGGAGGATTTCCCCCGTACTCCATCTCCTGTATATAACCAGTCTCGCTCCTTAAGCCCTGGAACAACAGATGAAGCAGCTGATCAAGATGTTTTTTTCG GTTCCTTGCATGATTCCACCGCTAGCACATCCAATGGCATTCCATCAATTCTAGGTATGAAAAATGTTAGACTATCATTGAATGCCGATCCCTCAATCGC TCCTGTTACAAGCTCATTGTCTCTTAAATGTACAGGAACCACACAACCCAAACCACCTCTTAGCAAAGGATTTGTAAATAGGGTAGACATAGGCGTTATT GAATCTAGAATGAAGGACCTTAATATATCTAGCCCTCAGAATCCCAAGGAGCAAAGATATCAAGAGCAGTGGCATCACAGCTACCAGAGCCATGTGCAGC AACACCAAGTCCACCAACAGCCAGGCAATGTGTTTCAAGTTCAAAATGCCAAGTCTCAAATGGGTTCTCAAGGAGTAAATTCTGCACACATCGGTATGGA TCAACTTCTCCATGGCCCATCAACATTCTCAGCGGAGGTGCAGTCGGTATTGCAGTCGCTTGGGTTCACACCTCCTCTTTATGGGACAACTGGCTACATG ACTTCACCAAATCCATTTTACCCAAATCTTCAGGCTCCAGGATTATGTGCTCCACAATATGGTATAGGGGGGTATGCTCTGAATTCAACTGTGATTCCTC CGTATGTTGCAGGATACCCCCCTCATGGTACGGTTTCAATGGTTTTTGATGGCTCTGCAAGTCCAAACTTTAATGCTGGAATGTCTGGGTCTTCAAGTGA AGGAAGCCTTGCCCATGGAGCTGATGTGCAACATTATAACAAGTTCTATGGGCAGCTTGGATATGTAGTTCAACCTTCAGTTATTGATCCTCTTTATATG CAATACTATCAACAGCCTTATGGACTAACATATAATATGTCTGGTCAATTTGATCCATCGGCATCTGGAGGTGGTGCTATTGGGAGACAAAACAATGCTC CTGCATCAAAGAAAGGATCCGAGGTTGCTGCTGGTTTGGAGGAACAGAAACTGCTACACCACCAGAGAGGTGGAGTGAGTGATCTTAATCGAAGCAGAGG TCGGGTAATGAATCTTCCTTATTTTGGAAACTCACCAAACATAGGTTTATTGCAGTACCCCTCGTCACCGCTTGCGAGCCCTGTTTTGCCAGGATCCCCA GTGGGGGGCACTGGTTTTTCTGGAGGGAGAAATGAAATGAGGTTCCCACCGGGAAGTGGTAGATATGCGCCTGTATGTTCTGGATGGCAAGGTCAAAGAG GACCAGAGAGTTTTAATGACCCTAAAATACATAATTTTCTTGAGGAGTTGAAATCTGGCAAAGTCCGCAGATTTGAGTTGTCTGATATTGTAGGGCATAT TGTTGAATTTAGTGCTGATCAACATGGTAGCCGATTTATTCAGCAGAAGTTGGAGAATTGCAGTGCTGAAGAGAAGGCATTGGTATTTAAAGAAGTTCTT CCACATGCTTCCAAATTAATGACCGATGTTTTTGGAAATTATCTTATTCAGAAAGTTTTTGAGTATGGAAGCATGGAGCAGAGGAAGGAACTTGCTAATC AGCTCACTGGTCAAATTTTGCATCTAAGTTTGCAGATGTATGGCTGCCGGGTAATCCAAAAGGCACTTGATGTAATCGAGCTTGATCAAAAAGCACAGCT TGTCCTTGAATTGGATGGACATGTTATGAAATGTGTACGTGATCAGAACGGTAATCATGTCATACAGAAGTGCATTGAGAGTGTTCCAGCAGAAAAAATT GGATTCATATTCTCAGCCTTCTGTGGTGAAGTTGCAACACTTTCCATGCATCCTTATGGTTGTCGTGTCATACAGAGAGTTCTAGAGCATTGTGCATATG AGCTGCAATGTGAGTTCATAGTGGATGAGATCTTGGAGTCTGTCCTCATTCTTGCTCAGGACCAGTATGGAAATTATGTGACTCAGCATGTATTGGAGAG GGGAAAACCTCGCGAAAGATACCAGATTATTAGCAAATTGTCAGGGCATATTGTCCTACTCAGCCAGCATAAGTTTGGGTCCAATGTTGTAGAGAAATGT TTGGAATATGGTGGTGCCACTGAGCGGGAAATAATAATTCAGGAGATTCTTGGGCAGAATGAAGGAAACGATAATCTATTGACAATGATGAAGGACCAAT ACGCAAATTATGTGGTCCAAAAGATTCTTGACACCTGTACTGATATTCAGCGGGCAATGTTGCTTAATCGAATAAGAACACATGTGCATGCTCTGAAGAA ATATACTTATGGGAAGCACATTGTTGCTAGATTCGAACAGCAATATGGGGAAGAGAATCAAACATCATGA
AA sequence Show only first row Show all	>Potri.003G009900.8 pacid=42787508 polypeptide=Potri.003G009900.8.p locus=Potri.003G009900 ID=Potri.003G009900.8.v4.1 annot-version=v4.1 MATESPLRMPSHESATFVPSTPNMAVEDLGFLRNGQRFRGSGGDAVPNRSGSAPPSMEGSFFAINNLISQQNSNLNPRLGSSNNALLAFNSEKQSYLSYY GTGASPNLRLPTPPIPRENQHPGRHAVKFGTNWGLAPIDDNSKNSLHLSQGLLSTHKEELEGDHSPKEPLDSLANMTNGFWSGGDAAPLAGQSKRLVDII QEDFPRTPSPVYNQSRSLSPGTTDEAADQDVFFGSLHDSTASTSNGIPSILGMKNVRLSLNADPSIAPVTSSLSLKCTGTTQPKPPLSKGFVNRVDIGVI ESRMKDLNISSPQNPKEQRYQEQWHHSYQSHVQQHQVHQQPGNVFQVQNAKSQMGSQGVNSAHIGMDQLLHGPSTFSAEVQSVLQSLGFTPPLYGTTGYM TSPNPFYPNLQAPGLCAPQYGIGGYALNSTVIPPYVAGYPPHGTVSMVFDGSASPNFNAGMSGSSSEGSLAHGADVQHYNKFYGQLGYVVQPSVIDPLYM QYYQQPYGLTYNMSGQFDPSASGGGAIGRQNNAPASKKGSEVAAGLEEQKLLHHQRGGVSDLNRSRGRVMNLPYFGNSPNIGLLQYPSSPLASPVLPGSP VGGTGFSGGRNEMRFPPGSGRYAPVCSGWQGQRGPESFNDPKIHNFLEELKSGKVRRFELSDIVGHIVEFSADQHGSRFIQQKLENCSAEEKALVFKEVL PHASKLMTDVFGNYLIQKVFEYGSMEQRKELANQLTGQILHLSLQMYGCRVIQKALDVIELDQKAQLVLELDGHVMKCVRDQNGNHVIQKCIESVPAEKI GFIFSAFCGEVATLSMHPYGCRVIQRVLEHCAYELQCEFIVDEILESVLILAQDQYGNYVTQHVLERGKPRERYQIISKLSGHIVLLSQHKFGSNVVEKC LEYGGATEREIIIQEILGQNEGNDNLLTMMKDQYANYVVQKILDTCTDIQRAMLLNRIRTHVHALKKYTYGKHIVARFEQQYGEENQTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25880		APUM6	pumilio 6 (.1.2.3)		Potri.003G009900 [exp]	0	1
AT5G44750		ATREV1, REV1	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.009G094400 [exp]	1.00	0.9232
AT1G45160			Protein kinase superfamily pro...		Potri.002G263000 [exp]	3.00	0.9071
AT2G43500		NLP8	Plant regulator RWP-RK family ...		Potri.017G018500 [exp]	3.74	0.8852
AT1G08620		PKDM7D	Transcription factor jumonji (...		Potri.019G018700 [exp]	3.87	0.9033
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Potri.008G078500 [exp]	4.89	0.9082
AT5G06950	bZIP	TGA2, AHBP-1B	bZIP transcription factor fami...		Potri.016G036500 [exp]	5.09	0.8866
AT5G13660			unknown protein		Potri.006G082800 [exp]	5.29	0.9006
AT5G45190			Cyclin family protein (.1.2)		Potri.007G067100 [exp]	5.47	0.8955
AT1G06230		GTE4	global transcription factor gr...		Potri.013G118900 [exp]	6.63	0.9059
AT3G49490			unknown protein		Potri.012G007000 [exp]	6.70	0.8960

Compare expression of checked genes

Potri.003G009900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.