Plant FIBer expression Database

Potri.003G010000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G17690 767 / 0 NOF1 nucleolar factor 1, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014835
[exp]
769 / 0 AT1G17690 688 / 0.0 nucleolar factor 1, unknown protein
Lus10009882
[exp]
761 / 0 AT1G17690 683 / 0.0 nucleolar factor 1, unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF06862 UTP25 Utp25, U3 small nucleolar RNA-associated SSU processome protein 25
Representative CDS sequence
>Potri.003G010000.8 pacid=42785075 polypeptide=Potri.003G010000.8.p locus=Potri.003G010000 ID=Potri.003G010000.8.v4.1 annot-version=v4.1
ATGCCAGCGCCATGTCTCACAGGATTGAAGAGGCACAAAAGAACAAACAAATCTTGGGCTGATGGGAAACAGAAACAGAAGAAAAGACCAAGAAAAGAAG
GTAAAATTGACTTGGAGGAAGATGTCGCTGGTGACTCCCAATCTCTCAGCATGTTTGAGGAAGATTCTGTTGAAGAAGGAAATGATAATGAAAGTGACCT
GCAAGAGCATAGAACTGTTGGCATTGTGGATGCGGATGGAGATTCTGATTCAGAAGATATTCAGGAGGCCTCCAACACCGATCAAGAACAAGAATTGGAT
GTCAAGTCCCAAACTGTTGCAAAGGCACCAGCTTCCAGAAGCTCTTTCCATTCTCACTTAGAGTATAAGTTACCAGAAACTGAGGTAGAGGATCTGTTGA
AGAAAAAGTGGAAATATCAATGGGATGTGCCTGCTTTTGGCATGCCAAATTGCAAGTGGGTAGGGACAGGAGAGTGTTTTCTGGAGGTAGCTAACGTAAA
CTCTGATTGTGGTCTCAAGCAAAGGTTATATAAACACTGGTTGGATGTGTGCAGGACATCTGGCAACAATGATTTTCATTCATCTCCACAGAGATTCTTC
TTCTCTCTTTGCAATAGCTACAGAGATATTTTGCACTGTAACAAGAAGCCTTTTTACCGCAAGGGCCTAAAAGAAGACTTGGCCATCATGGATGCATACA
TTATGCACTGTCTAAATCACATTTTCAGAACGAGAGATCTTGTGACCAAGAATGATTCAAAAGTGGGCAAGCATTGGGAGAATGCTAAGGATGAATTGCT
TAGTGGAGATGAATTCCTTGATCATGGGTTTACTCGTCCAAAGGTTTTGATCCTACTGCCCTTTAGAAGCATTGCAAATCGTGCTGTTAATAGGCTAATA
CAACTGACCCCCGGAGCTTACAAGGTTAATGTGGAGCACATGAGTCGTTTCTCTAACGAGTTTGGAAATCACGATGATGAAGACAATGTAAACACCAATG
AGTTAACTGGAAGTGTTAAAAACTCAAACTCCCAGAAGTCCTCAAAACCACCTGACCATCAAGCACTTTTTGATGGAAATGTAGATGATAAATTTATGAT
AGGCATTAAATTTACAAGGAAGAGCATTAAGTTATATAGTGATTTCTATTCCTCAGACTTGATAGTCGCTTCTCCTTTGGCATTGCTGAAGAAAATTGAG
GAAGCTAAACGTGACAAGGAAAAAGATGTGGATTATCTTTCTTCTATAGAGGTTCTTATCATTGATCATGCAGATGTTATAGCAATGCAGAATTGGGCCT
TCCTTACATCAGTTCTTGAACAATTGAATTGCATTCCTTCTAAGCAGCATGGGACTGATATAATGCGCATTAGAAAGTGGTATTTGGATGGACATGCCAG
ATTTTATCGGCAAACAATTGTTTTAGGTTGTTATGCAAACCCAGACATTAATGCTTCCTTCAATCGTCAATGTGTAAACTACCAAGGAAAGGTAAAGTTG
ATATGTCAGTATAAAGGTGTTCTTCCAAAAGTCTCAGACCAAGTACGACAGATTTATCAGCGATTTGATGCAGACTCTGTGGCAGAAGCTGACAATGCTC
GACTTGACTACTTTGTTCAGAAGGTGTTCCCAAAAATTAAAGATTCAGATGAGGGTGGGGTTATGCTATTTATTAGTTCTTACTATGAATATGTTCGACT
TCGTAACTTTTTGAAGTCGCAGAATGCATCCCTGTGTCTGCTTGGAGACTACGCCGAACCAAGGGATGTCACTCGTATGCGGAATTGGTTTCGTAATGGA
GAAAAGAAAATCATGCTTTACACAGAAAGATTTCATTTTTACCGTAGATACAAGATTGGTGGTGTTCGAAATTTGATCGTCTATTCTCTCCCTGAGAGGA
AGGAGTTCTTCCCGGAGGTTGTCAACATGCTTGAAGGGGCTGATGACATGACATGCACTGTGCTCTTTTCTCAATTCGATCAACTCCAGCTAGAGAGAAT
TGTTGGAACTGCTTCTGCAAGAAGAATGATCACCTCAGAAAAGGGTGTCTTTGTGTTCTGTTGA
AA sequence
>Potri.003G010000.8 pacid=42785075 polypeptide=Potri.003G010000.8.p locus=Potri.003G010000 ID=Potri.003G010000.8.v4.1 annot-version=v4.1
MPAPCLTGLKRHKRTNKSWADGKQKQKKRPRKEGKIDLEEDVAGDSQSLSMFEEDSVEEGNDNESDLQEHRTVGIVDADGDSDSEDIQEASNTDQEQELD
VKSQTVAKAPASRSSFHSHLEYKLPETEVEDLLKKKWKYQWDVPAFGMPNCKWVGTGECFLEVANVNSDCGLKQRLYKHWLDVCRTSGNNDFHSSPQRFF
FSLCNSYRDILHCNKKPFYRKGLKEDLAIMDAYIMHCLNHIFRTRDLVTKNDSKVGKHWENAKDELLSGDEFLDHGFTRPKVLILLPFRSIANRAVNRLI
QLTPGAYKVNVEHMSRFSNEFGNHDDEDNVNTNELTGSVKNSNSQKSSKPPDHQALFDGNVDDKFMIGIKFTRKSIKLYSDFYSSDLIVASPLALLKKIE
EAKRDKEKDVDYLSSIEVLIIDHADVIAMQNWAFLTSVLEQLNCIPSKQHGTDIMRIRKWYLDGHARFYRQTIVLGCYANPDINASFNRQCVNYQGKVKL
ICQYKGVLPKVSDQVRQIYQRFDADSVAEADNARLDYFVQKVFPKIKDSDEGGVMLFISSYYEYVRLRNFLKSQNASLCLLGDYAEPRDVTRMRNWFRNG
EKKIMLYTERFHFYRRYKIGGVRNLIVYSLPERKEFFPEVVNMLEGADDMTCTVLFSQFDQLQLERIVGTASARRMITSEKGVFVFC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G17690 NOF1 nucleolar factor 1, unknown pr... Potri.003G010000
[exp]
0 1
AT1G74240 Mitochondrial substrate carrie... Potri.012G066000
[exp]
1.73 0.8337
AT2G28450 C3HZnF zinc finger (CCCH-type) family... Potri.009G013000
[exp]
3.16 0.8313
AT2G06990 HEN2 hua enhancer 2, RNA helicase, ... Potri.006G078000
[exp]
5.74 0.8275 HEN2.1
AT5G48120 ARM repeat superfamily protein... Potri.003G048800
[exp]
7.07 0.8037
AT5G25480 AtDNMT2, DNMT2 DNA METHYLTRANSFERASE 2, DNA m... Potri.006G250800
[exp]
8.30 0.7507
AT5G64420 DNA polymerase V family (.1) Potri.001G285600
[exp]
9.38 0.7948
AT2G22400 S-adenosyl-L-methionine-depend... Potri.007G096100
[exp]
9.94 0.7904
AT3G12940 2-oxoglutarate (2OG) and Fe(II... Potri.011G143000
[exp]
11.00 0.7837
AT1G80410 OMA, EMB2753 OMISHA, EMBRYO DEFECTIVE 2753,... Potri.003G056700
[exp]
11.48 0.7519
AT3G11220 ELO1 ELONGATA 1, Paxneb protein-rel... Potri.010G189500
[exp]
12.40 0.7718

Potri.003G010000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.