Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23170 269 / 3e-88 Protein kinase superfamily protein (.1) AT3G51990 238 / 7e-76 Protein kinase superfamily protein (.1) AT1G28390 238 / 2e-74 Protein kinase superfamily protein (.1.2) AT3G59420 205 / 5e-59 ACR4 crinkly4 (.1) AT3G58690 187 / 8e-56 Protein kinase superfamily protein (.1) AT5G38560 187 / 1e-53 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT5G47850 186 / 9e-53 CCR4 CRINKLY4 related 4 (.1) AT1G10620 184 / 3e-52 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT3G28690 175 / 2e-51 Protein kinase superfamily protein (.1.2.3) AT1G24030 173 / 7e-51 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G221800 [exp] 597 / 0 AT5G23170 273 / 1e-89 Protein kinase superfamily protein (.1) Potri.005G158600 [exp] 274 / 5e-88 AT1G28390 397 / 3e-134 Protein kinase superfamily protein (.1.2) Potri.001G260800 [exp] 259 / 2e-83 AT3G51990 419 / 5e-146 Protein kinase superfamily protein (.1) Potri.009G055200 [exp] 256 / 2e-81 AT3G51990 409 / 7e-141 Protein kinase superfamily protein (.1) Potri.013G025700 [exp] 194 / 4e-58 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.017G029900 [exp] 201 / 2e-57 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.019G078300 [exp] 195 / 7e-56 AT5G47850 699 / 0.0 CRINKLY4 related 4 (.1) Potri.013G103300 [exp] 194 / 9e-56 AT5G47850 649 / 0.0 CRINKLY4 related 4 (.1) Potri.007G128400 [exp] 195 / 1e-55 AT3G59420 1264 / 0.0 crinkly4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019948 [exp] 261 / 6e-86 AT3G51990 174 / 3e-52 Protein kinase superfamily protein (.1) Lus10016371 [exp] 259 / 2e-82 AT3G51990 402 / 3e-138 Protein kinase superfamily protein (.1) Lus10039770 [exp] 254 / 2e-80 AT1G28390 379 / 2e-127 Protein kinase superfamily protein (.1.2) Lus10015478 [exp] 246 / 6e-79 AT3G51990 169 / 2e-49 Protein kinase superfamily protein (.1) Lus10015956 [exp] 203 / 2e-58 AT3G59420 1258 / 0.0 crinkly4 (.1) Lus10000764 [exp] 202 / 6e-58 AT3G59420 1255 / 0.0 crinkly4 (.1) Lus10032741 [exp] 191 / 2e-54 AT2G23450 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10029170 [exp] 190 / 4e-54 AT5G47850 678 / 0.0 CRINKLY4 related 4 (.1) Lus10024020 [exp] 184 / 6e-53 AT2G18470 591 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10029948 [exp] 181 / 2e-52 AT1G54820 469 / 1e-162 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.003G010300.1 pacid=42785902 polypeptide=Potri.003G010300.1.p locus=Potri.003G010300 ID=Potri.003G010300.1.v4.1 annot-version=v4.1 ATGGATGTGTTTGACTATCAACAACTTGTAAAGGCAACTGGGAGTTTCTCTCCTTCGAGACTTTTAGGCAAAGGAAGCCATGGATCAATCTACAAAGGCA TACTTGAAGAAAATAAGCTTGTTGCAATCAAGAAATCGTCATCTCTTGGTACTGATCATGTCTCTGCTGACAACTCCAAGAAACTTGAGAACGAAATATC TGTGCTATCTTCCCTACGTGAAAGTCCATATGTCATCAACTTTCTTGGAACGAGTCATTATCATCACAACTCAAATTGCAAGGAGAAGAACAGGGTTTTG GTTTTGGAGTTTATGCCTAATGGTTCTCTCCATGACTTGCTCCATGTTGATGCCACTCCACCACCATGGCCTAAACGTGTAGAAATCGCTATTCAAATTG CAAGGGCAGTCCAATTCCTTCATGAAGGCAAGCCTTTGGTTATTCATAGAGACATCAAATCTGCTAATATTTTGTTTGACATAAATTGGAAGGCTAAGTT GGCAGATTTCGGACTCTCAGTGTTGCTAGCAGACTCATCAAGTCATGATCATGCAACTCAACCGGCTGGCACTATTGGGTACTTGGACCCTTCTTACACC ACTCCAAGCAAACTAAGCACTAAGATTGATGTCTTCAGCTATGGAGTTGTTTTGTTAGAGATCATTAGTTGTCAGAAAGTGATTGATGTCTCGAGGTCGC CATCTTCAATTGTTGAGTGGGCAGTGCCATTGATTGAAGAGCAAAGATTGATGGAGATATGCGACACAAGAATTGCACTGCCAACATTCATGGAGGGCAC GATTAAGCACTTGTTATATGTGGCAGCACGTTGTGTGTCTTGCAGGGAAGAAAATCGTCCATCCATTACTGAAATTGTAAAGGGGATGGATAAGAATTGT TTGGTTGAAAGAGTACAAATGCCCAGTTGGACAAGTCTCATGAGGAGCGTGATACTAACGAGAAGGCCAAGAGAATTGGCTGAGCAATGGCAGCAGGCAA AATGTGATGATGCAAATTGTGACATTTCTAAAGGGATGAAGGCATATTTATGGGAGATATTGGCTTATATTACTACACTCGAATAA
AA sequence Show only first row Show all	>Potri.003G010300.1 pacid=42785902 polypeptide=Potri.003G010300.1.p locus=Potri.003G010300 ID=Potri.003G010300.1.v4.1 annot-version=v4.1 MDVFDYQQLVKATGSFSPSRLLGKGSHGSIYKGILEENKLVAIKKSSSLGTDHVSADNSKKLENEISVLSSLRESPYVINFLGTSHYHHNSNCKEKNRVL VLEFMPNGSLHDLLHVDATPPPWPKRVEIAIQIARAVQFLHEGKPLVIHRDIKSANILFDINWKAKLADFGLSVLLADSSSHDHATQPAGTIGYLDPSYT TPSKLSTKIDVFSYGVVLLEIISCQKVIDVSRSPSSIVEWAVPLIEEQRLMEICDTRIALPTFMEGTIKHLLYVAARCVSCREENRPSITEIVKGMDKNC LVERVQMPSWTSLMRSVILTRRPRELAEQWQQAKCDDANCDISKGMKAYLWEILAYITTLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23170			Protein kinase superfamily pro...		Potri.003G010300 [exp]	0	1
AT3G50610			unknown protein		Potri.005G136700 [exp]	11.35	0.7894
AT5G41761			unknown protein		Potri.014G095000 [exp]	16.24	0.7744
AT5G66816			unknown protein		Potri.007G042000 [exp]	18.57	0.7720
AT1G47670			Transmembrane amino acid trans...		Potri.004G181000 [exp]	29.74	0.7426
AT5G39130			RmlC-like cupins superfamily p...		Potri.013G063101 [exp]	34.85	0.7500
					Potri.005G189000 [exp]	38.20	0.7473
AT4G37280			MRG family protein (.1)		Potri.002G122500 [exp]	38.72	0.7328
					Potri.003G010664 [exp]	39.11	0.7418
					Potri.006G076350 [exp]	39.49	0.7328
AT4G10490			2-oxoglutarate (2OG) and Fe(II...		Potri.014G106700 [exp]	40.24	0.7328

Compare expression of checked genes

Potri.003G010300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.