Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68840 54 / 2e-09 AP2_ERF EDF2, RAV2, RAP2.8, TEM2, AtRAV2 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) AT2G46870 54 / 3e-09 B3 NGA1 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) AT1G13260 52 / 1e-08 AP2_ERF EDF4, RAV1 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) AT4G01500 50 / 4e-08 B3 NGA4 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) AT3G25730 49 / 7e-08 AP2_ERF EDF3 ethylene response DNA binding factor 3 (.1) AT2G33860 49 / 1e-07 ARF ARF3, ETT ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT1G01030 48 / 3e-07 B3 NGA3 NGATHA3, AP2/B3-like transcriptional factor family protein (.1) AT5G60450 48 / 3e-07 ARF ARF4 auxin response factor 4 (.1) AT2G28350 47 / 7e-07 ARF ARF10 auxin response factor 10 (.1) AT1G35520 45 / 2e-06 ARF ARF15 auxin response factor 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G011132 [exp] 214 / 1e-73 AT1G68840 44 / 7e-06 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) Potri.003G011066 [exp] 214 / 2e-73 AT1G35240 43 / 2e-05 auxin response factor 20 (.1) Potri.004G219450 [exp] 168 / 3e-55 AT1G13260 45 / 4e-06 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Potri.004G219800 [exp] 130 / 5e-40 AT3G53310 / AP2/B3-like transcriptional factor family protein (.1) Potri.004G219900 [exp] 125 / 5e-38 AT3G53310 / AP2/B3-like transcriptional factor family protein (.1) Potri.004G220100 [exp] 119 / 6e-36 AT1G35520 44 / 6e-06 auxin response factor 15 (.1) Potri.004G219700 [exp] 112 / 6e-33 AT1G13260 41 / 6e-05 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Potri.015G016100 [exp] 92 / 4e-25 AT4G01500 54 / 2e-09 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) Potri.015G015800 [exp] 91 / 1e-24 AT1G13260 44 / 7e-06 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005264 [exp] 52 / 2e-08 AT2G33860 580 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10013942 [exp] 52 / 2e-08 AT2G33860 579 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10021326 [exp] 50 / 5e-08 AT5G06250 202 / 2e-63 AP2/B3-like transcriptional factor family protein (.1.2) Lus10041487 [exp] 49 / 2e-07 AT1G13260 416 / 8e-146 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Lus10026510 [exp] 46 / 1e-06 AT4G30080 694 / 0.0 auxin response factor 16 (.1) Lus10021707 [exp] 46 / 1e-06 AT1G13260 369 / 1e-127 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Lus10024754 [exp] 46 / 2e-06 AT1G77850 505 / 1e-173 auxin response factor 17 (.1) Lus10030240 [exp] 46 / 2e-06 AT2G46530 381 / 1e-126 auxin response factor 11 (.1.2.3) Lus10021467 [exp] 46 / 2e-06 AT4G30080 588 / 0.0 auxin response factor 16 (.1) Lus10019940 [exp] 45 / 2e-06 AT4G30080 660 / 0.0 auxin response factor 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.003G010700.1 pacid=42785883 polypeptide=Potri.003G010700.1.p locus=Potri.003G010700 ID=Potri.003G010700.1.v4.1 annot-version=v4.1 ATGTCTGTCAACATGCCAAAACACCTATTCGAAAAGAAACTCTCAAAAACAGACATTGAAAATAGAATGTCAGTTCCGATGAAAAGCCTCGACGCTTTCC GAATCCCAAAAGGAGAACACTCTAAAGACTTTGGTGTCACTGACATCCATGGCAAGAGGTGGAGGTTCCGATATTCTACAAGAAAAAGTGACCGCCATCC TAAACCAGTCCTGTCTTCAGGTTGGATAGAGTTCGCCAAAAAACGGGGTCTCAAAGTAGGTGATGCAGTCACCTTCTCTGTGGTGGGCATGAAGGGAGCT GAGGATCTGGAATTGGGAATTCAAGCTCGGAAAAAAATCAAGTTATTCGGCGAAGTTTTTTGGAGTAATCCTCTGTGA
AA sequence Show only first row Show all	>Potri.003G010700.1 pacid=42785883 polypeptide=Potri.003G010700.1.p locus=Potri.003G010700 ID=Potri.003G010700.1.v4.1 annot-version=v4.1 MSVNMPKHLFEKKLSKTDIENRMSVPMKSLDAFRIPKGEHSKDFGVTDIHGKRWRFRYSTRKSDRHPKPVLSSGWIEFAKKRGLKVGDAVTFSVVGMKGA EDLELGIQARKKIKLFGEVFWSNPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68840	AP2_ERF	EDF2, RAV2, RAP...	TEMPRANILLO 2, RELATED TO AP2 ...		Potri.003G010700 [exp]	0	1
AT4G01500	B3	NGA4	NGATHA4, AP2/B3-like transcrip...		Potri.004G221300 [exp]	1.41	0.9974
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Potri.004G219450 [exp]	2.00	0.9973
					Potri.011G005400 [exp]	4.47	0.9972
					Potri.011G005500 [exp]	7.93	0.9972
AT4G27270			Quinone reductase family prote...		Potri.011G129400 [exp]	9.05	0.9937	FQR1.2
AT1G78780			pathogenesis-related family pr...		Potri.005G188300 [exp]	10.58	0.9959
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G220000 [exp]	11.83	0.9965
AT5G06740			Concanavalin A-like lectin pro...		Potri.004G209300 [exp]	13.26	0.9964
					Potri.003G165550 [exp]	16.24	0.9864
					Potri.001G091400 [exp]	16.97	0.9965

Compare expression of checked genes

Potri.003G010700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.