Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68840 44 / 8e-06 AP2_ERF EDF2, RAV2, RAP2.8, TEM2, AtRAV2 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) AT2G46870 43 / 1e-05 B3 NGA1 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) AT1G34390 42 / 2e-05 ARF ARF22 auxin response factor 22 (.1) AT1G35520 42 / 3e-05 ARF ARF15 auxin response factor 15 (.1) AT1G13260 42 / 3e-05 AP2_ERF EDF4, RAV1 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) AT1G35240 40 / 9e-05 ARF ARF20 auxin response factor 20 (.1) AT4G01500 40 / 0.0001 B3 NGA4 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) AT1G77850 40 / 0.0002 ARF ARF17 auxin response factor 17 (.1) AT1G43950 39 / 0.0003 ARF ARF23 auxin response factor 23 (.1) AT3G25730 39 / 0.0004 AP2_ERF EDF3 ethylene response DNA binding factor 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G011066 [exp] 223 / 5e-77 AT1G35240 43 / 2e-05 auxin response factor 20 (.1) Potri.003G010700 [exp] 214 / 1e-73 AT1G68840 55 / 1e-09 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) Potri.004G219450 [exp] 178 / 4e-59 AT1G13260 45 / 4e-06 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Potri.004G219800 [exp] 139 / 1e-43 AT3G53310 / AP2/B3-like transcriptional factor family protein (.1) Potri.004G219900 [exp] 130 / 2e-40 AT3G53310 / AP2/B3-like transcriptional factor family protein (.1) Potri.004G220100 [exp] 128 / 1e-39 AT1G35520 44 / 6e-06 auxin response factor 15 (.1) Potri.004G219700 [exp] 117 / 5e-35 AT1G13260 41 / 6e-05 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Potri.012G013700 [exp] 90 / 2e-24 AT4G01500 52 / 6e-09 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) Potri.015G016100 [exp] 89 / 9e-24 AT4G01500 54 / 2e-09 NGATHA4, AP2/B3-like transcriptional factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030240 [exp] 45 / 5e-06 AT2G46530 381 / 1e-126 auxin response factor 11 (.1.2.3) Lus10025913 [exp] 42 / 5e-05 AT3G18990 81 / 2e-18 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10005264 [exp] 40 / 0.0001 AT2G33860 580 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10013942 [exp] 40 / 0.0003 AT2G33860 579 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10040403 [exp] 39 / 0.0003 AT4G30080 625 / 0.0 auxin response factor 16 (.1) Lus10005930 [exp] 39 / 0.0006 AT5G62000 361 / 2e-112 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10023519 [exp] 39 / 0.0006 AT4G30080 622 / 0.0 auxin response factor 16 (.1) Lus10040906 [exp] 38 / 0.0008 AT5G62000 367 / 2e-114 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10041487 [exp] 38 / 0.0008 AT1G13260 416 / 8e-146 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Lus10024754 [exp] 38 / 0.0009 AT1G77850 505 / 1e-173 auxin response factor 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.003G011132.1 pacid=42786609 polypeptide=Potri.003G011132.1.p locus=Potri.003G011132 ID=Potri.003G011132.1.v4.1 annot-version=v4.1 ATGCCAAAAAACCTATTCATAAAGGAACTCTCAAAAACTGACATTGAATATAGAATGGCAGTTCCGATGAAAAGCCTCGACGCTTTCCGAATCCCAGAAG GAGAACACTCTAAAGACTTTGGTGTCACTGACATCCATGGCAAGAGGTGGAGGTTCCGATGTTCTACAAGAAAAAGTGACCCCTACCCTAAACCAGTCCT GTCTTCAGGTTGGATAGAGTTCGCCAAAACAAGGAGTCTCAAAGTAGGAGATGAAGTCACCTTCTCTGTGGTGGACATGAAGGGAGCTGAGGATCTGGAA TTGGGAATTCAAGCTCGGAAAAGAATCAAGTTATTCGGCCAAGAGTTTTGGAGTAATCCTCTGTGA
AA sequence Show only first row Show all	>Potri.003G011132.1 pacid=42786609 polypeptide=Potri.003G011132.1.p locus=Potri.003G011132 ID=Potri.003G011132.1.v4.1 annot-version=v4.1 MPKNLFIKELSKTDIEYRMAVPMKSLDAFRIPEGEHSKDFGVTDIHGKRWRFRCSTRKSDPYPKPVLSSGWIEFAKTRSLKVGDEVTFSVVDMKGAEDLE LGIQARKRIKLFGQEFWSNPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68840	AP2_ERF	EDF2, RAV2, RAP...	TEMPRANILLO 2, RELATED TO AP2 ...		Potri.003G011132 [exp]	0	1
AT2G42350			RING/U-box superfamily protein...		Potri.011G063100 [exp]	3.16	0.9806
AT5G08350			GRAM domain-containing protein...		Potri.004G068000 [exp]	6.78	0.9794
AT2G29150			NAD(P)-binding Rossmann-fold s...		Potri.001G245000 [exp]	8.00	0.9550
AT1G66920			Protein kinase superfamily pro...		Potri.012G003000 [exp]	8.36	0.9760
AT1G66920			Protein kinase superfamily pro...		Potri.012G003200 [exp]	12.36	0.9719
AT1G66920			Protein kinase superfamily pro...		Potri.012G002800 [exp]	14.00	0.9766
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Potri.008G026700 [exp]	14.17	0.9547	PtrProT5
AT1G02070			unknown protein		Potri.005G158400 [exp]	14.69	0.9478
AT1G66920			Protein kinase superfamily pro...		Potri.012G003500 [exp]	18.00	0.9660
AT2G16050			Cysteine/Histidine-rich C1 dom...		Potri.010G205200 [exp]	18.33	0.9597

Compare expression of checked genes

Potri.003G011132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.