Plant FIBer expression Database

Potri.003G011850 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.003G011850.7 pacid=42786855 polypeptide=Potri.003G011850.7.p locus=Potri.003G011850 ID=Potri.003G011850.7.v4.1 annot-version=v4.1
ATGGACCAGTGGTTCTTAAGGCAGATTTTACATTTTGCAGCTGATTGCCATGTGAGCTGGAATGGTAGGGATGCTGCTCGTTCAAATGCCACCATGATCT
CTTGGCAGAGTCCAATCCAAGGATTCATTAAATTGGATCTGGACAAAAGCTCTATTGGTTATGGTCCCAAGTTACTTCCAGAGCTCCTCGCCTTGAAGCA
TGGCCTCTTGATTGCTTGGAACTGGGGTTATAAGCAAGTCCTTTGTAACTCAGACTCTATGGATTCTCTACTGCTAATTAAAAATTATGACATCGATTTT
CATCTTTATAACCATCATTATGGATATTCGTTATCTCCTCTCAAGGGAATGAGAAGTTTAGCTTTGTCATACTCTACGAGAAGACAACTGTTGTGCAGAT
TTTCTTGCCAAATTAGGTGCTAA
AA sequence
>Potri.003G011850.7 pacid=42786855 polypeptide=Potri.003G011850.7.p locus=Potri.003G011850 ID=Potri.003G011850.7.v4.1 annot-version=v4.1
MDQWFLRQILHFAADCHVSWNGRDAARSNATMISWQSPIQGFIKLDLDKSSIGYGPKLLPELLALKHGLLIAWNWGYKQVLCNSDSMDSLLLIKNYDIDF
HLYNHHYGYSLSPLKGMRSLALSYSTRRQLLCRFSCQIRC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.003G011850
[exp]
0 1
Potri.013G094050
[exp]
24.97 0.6778
Potri.002G047750
[exp]
28.74 0.7042
Potri.008G206100
[exp]
30.88 0.6863
Potri.012G124633
[exp]
36.33 0.6515
AT4G22990 Major Facilitator Superfamily ... Potri.014G078000
[exp]
40.21 0.6858
AT1G10150 ATPP2-A10 Carbohydrate-binding protein (... Potri.014G006800
[exp]
43.26 0.6680
AT1G47890 AtRLP7 receptor like protein 7 (.1) Potri.001G437700
[exp]
44.32 0.6629
AT4G25040 Uncharacterised protein family... Potri.015G103600
[exp]
45.32 0.6466
AT1G79900 ATMBAC2, BAC2 RABIDOPSIS MITOCHONDRIAL BASIC... Potri.003G053900
[exp]
45.54 0.6578
AT1G58602 LRR and NB-ARC domains-contain... Potri.011G031312
[exp]
52.53 0.6519

Potri.003G011850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.