Gene [POPLAR] | FIBexDB

Potri.003G011875 [POPLAR]

External link

JGI Phytozome v13

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Popgenie

AspWood

Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	TF class	Alias	TAIR10 short description
AT1G34410	39 / 0.0007	ARF	ARF21	auxin response factor 21 (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.003G014750 [exp]	246 / 9e-86	AT3G53310	/	AP2/B3-like transcriptional factor family protein (.1)
Potri.003G013601 [exp]	246 / 9e-86	AT3G53310	/	AP2/B3-like transcriptional factor family protein (.1)
Potri.003G021250 [exp]	242 / 4e-84	AT3G53310	/	AP2/B3-like transcriptional factor family protein (.1)
Potri.003G013026 [exp]	239 / 5e-83	AT3G53310	/	AP2/B3-like transcriptional factor family protein (.1)
Potri.003G016733 [exp]	236 / 1e-81	AT3G53310	/	AP2/B3-like transcriptional factor family protein (.1)
Potri.004G221300 [exp]	83 / 4e-21	AT4G01500	48 / 4e-07	NGATHA4, AP2/B3-like transcriptional factor family protein (.1)
Potri.004G219800 [exp]	82 / 7e-21	AT3G53310	/	AP2/B3-like transcriptional factor family protein (.1)
Potri.004G221600 [exp]	81 / 9e-21	AT3G53310	/	AP2/B3-like transcriptional factor family protein (.1)
Potri.012G013700 [exp]	79 / 8e-20	AT4G01500	52 / 6e-09	NGATHA4, AP2/B3-like transcriptional factor family protein (.1)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10040906 [exp]	39 / 0.0008	AT5G62000	367 / 2e-114	ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0405 [poplar] [flax]	DNA_b-psBarrel	PF02362 [poplar] [flax]	B3	B3 DNA binding domain

Representative CDS sequence

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>Potri.003G011875.1 pacid=42785161 polypeptide=Potri.003G011875.1.p locus=Potri.003G011875 ID=Potri.003G011875.1.v4.1 annot-version=v4.1

ATGGAACAAGTACATCTCTTCACAAAGAAACTAAAACCAACCCATATAAGCCATTCTCTTTCATTTCCAACCCATGTCCTTGAGGCTTTTCCATTTCCTC

AAGGAGCCCATACGATGAAATTTGAAGCAGTCGATGCTACTGATAATGTATGGAGGTTTTGCTTGTCAACCCGTCTGACTGGAGCATACCCGAAACCCGT

TCTTCTACGCTCTTCTTGGCATCGTTTTGTAGAGCAGAAAGGCCTTGTTCCCGAAGACAGGGTTGTCTTCTTCATGGAGAGAGATGACATGGTCAGGAGG

TACACGGTGAGAGCTCAACGGAAAGTGATGATCTTGATGGGGCAAGATGTTTGGGTCGACGTCGAGGATCTTCCCCTGTATGGTCTTTGA

AA sequence

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>Potri.003G011875.1 pacid=42785161 polypeptide=Potri.003G011875.1.p locus=Potri.003G011875 ID=Potri.003G011875.1.v4.1 annot-version=v4.1

MEQVHLFTKKLKPTHISHSLSFPTHVLEAFPFPQGAHTMKFEAVDATDNVWRFCLSTRLTGAYPKPVLLRSSWHRFVEQKGLVPEDRVVFFMERDDMVRR

YTVRAQRKVMILMGQDVWVDVEDLPLYGL

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.003G011875 [exp]	0	1

Potri.003G011875 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.