Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15760 205 / 2e-67 Sterile alpha motif (SAM) domain-containing protein (.1) AT1G80520 185 / 7e-60 Sterile alpha motif (SAM) domain-containing protein (.1) AT2G12462 111 / 4e-30 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G204600 [exp] 351 / 3e-125 AT1G15760 202 / 2e-66 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.006G061400 [exp] 140 / 1e-41 AT2G12462 180 / 3e-56 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041687 [exp] 164 / 5e-51 AT1G15760 158 / 1e-48 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10024059 [exp] 161 / 6e-50 AT1G80520 151 / 5e-46 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10001679 [exp] 114 / 3e-31 AT2G12462 136 / 5e-39 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0003 [poplar] [flax] SAM PF07647 [poplar] [flax] SAM_2 SAM domain (Sterile alpha motif)
Representative CDS sequence Show only first row Show all	>Potri.003G012100.1 pacid=42784511 polypeptide=Potri.003G012100.1.p locus=Potri.003G012100 ID=Potri.003G012100.1.v4.1 annot-version=v4.1 ATGGATTGGTTCTCGTGGCTATCAAAAACTGGCCTCGAGCCTTCTCTTGTGTATGAATACGGCCTTGCCTTCGCTCACAATGAGCTTGAAGAAGAAGACA TAGCTTACTTTAACCATGAATTTCTTCAAAGCATGGGGGTGTCAATAGCCAAACACAGGCTCGAGATCCTCAAGCTTGCAAGAAAGGAGAAGGGATCGAG CTCACGTGCCATGGCAAGGGTTCTTGTTGCAATCAAGAGAACAAAGAGGTCTCTAGCTAAGTACGTAAGGACATGGGTTCACCGCGAGGAGTCGGCTCTT GTTCTTGTTCCAAAGCCTGGTTACGGTACCAGATGGAGAGGAGCCATGTTGAAGAGGAACAAGAAGTTGATGACGGCTAAACAAAGCAGGTTGTTGCTTA CAAATGGTAGTTTTTCGAACACTCCTATGATTTCTGCTGCGCCAGCCCTTGATAGTTTTTCAAGTCCTGTGATTTGTGATCTCAACAAAGAGGAGAAGTT AGAGAACGATGACGAAGGGTATTGGACAACTGGTGTTGAAGAGTTCAGGTGGGATACCATGTTCCAGAACTTGAAACCAACATGA
AA sequence Show only first row Show all	>Potri.003G012100.1 pacid=42784511 polypeptide=Potri.003G012100.1.p locus=Potri.003G012100 ID=Potri.003G012100.1.v4.1 annot-version=v4.1 MDWFSWLSKTGLEPSLVYEYGLAFAHNELEEEDIAYFNHEFLQSMGVSIAKHRLEILKLARKEKGSSSRAMARVLVAIKRTKRSLAKYVRTWVHREESAL VLVPKPGYGTRWRGAMLKRNKKLMTAKQSRLLLTNGSFSNTPMISAAPALDSFSSPVICDLNKEEKLENDDEGYWTTGVEEFRWDTMFQNLKPT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15760			Sterile alpha motif (SAM) doma...		Potri.003G012100 [exp]	0	1
AT2G17350			unknown protein		Potri.009G169200 [exp]	1.73	0.9270
AT4G36710	GRAS	AtHAM4	Arabidopsis thaliana HAIRY MER...		Potri.007G029200 [exp]	5.47	0.9104
AT3G09600	MYB	LCL5 (LHY-CCA1-...	REVEILLE 8, LHY-CCA1-LIKE5, Ho...		Potri.006G133000 [exp]	5.47	0.9163
AT1G28310	DOF	AtDof1. 4	Dof-type zinc finger DNA-bindi...		Potri.004G046600 [exp]	10.24	0.8967
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.004G069600 [exp]	11.40	0.9061
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Potri.009G125600 [exp]	11.48	0.9172
AT5G14570		ATNRT2.7	high affinity nitrate transpor...		Potri.001G348300 [exp]	15.23	0.9121
AT1G06210			ENTH/VHS/GAT family protein (....		Potri.005G225000 [exp]	21.67	0.8837
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Potri.016G014300 [exp]	21.90	0.8951
AT5G65620			Zincin-like metalloproteases f...		Potri.009G151300 [exp]	23.91	0.9052

Compare expression of checked genes

Potri.003G012100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.