Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80530 651 / 0 Major facilitator superfamily protein (.1) AT4G34950 339 / 1e-109 Major facilitator superfamily protein (.1) AT3G01930 321 / 1e-102 Major facilitator superfamily protein (.1.2) AT5G14120 318 / 2e-101 Major facilitator superfamily protein (.1) AT2G16660 303 / 5e-96 Major facilitator superfamily protein (.1) AT5G50520 284 / 8e-89 Major facilitator superfamily protein (.1) AT5G50630 284 / 8e-89 Major facilitator superfamily protein (.1) AT2G28120 222 / 5e-65 Major facilitator superfamily protein (.1) AT1G31470 185 / 2e-51 NFD4 NUCLEAR FUSION DEFECTIVE 4, Major facilitator superfamily protein (.1) AT1G18940 150 / 3e-39 Nodulin-like / Major Facilitator Superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G204700 [exp] 803 / 0 AT1G80530 625 / 0.0 Major facilitator superfamily protein (.1) Potri.006G060900 [exp] 700 / 0 AT1G80530 632 / 0.0 Major facilitator superfamily protein (.1) Potri.004G173400 [exp] 347 / 8e-113 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1) Potri.012G098900 [exp] 329 / 2e-105 AT5G14120 681 / 0.0 Major facilitator superfamily protein (.1) Potri.005G112400 [exp] 318 / 5e-102 AT4G34950 618 / 0.0 Major facilitator superfamily protein (.1) Potri.009G132700 [exp] 318 / 1e-101 AT4G34950 661 / 0.0 Major facilitator superfamily protein (.1) Potri.017G064201 [exp] 312 / 5e-99 AT3G01930 805 / 0.0 Major facilitator superfamily protein (.1.2) Potri.001G329100 [exp] 308 / 1e-97 AT3G01930 869 / 0.0 Major facilitator superfamily protein (.1.2) Potri.003G016725 [exp] 203 / 4e-63 AT1G80530 160 / 2e-47 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017971 [exp] 771 / 0 AT1G80530 716 / 0.0 Major facilitator superfamily protein (.1) Lus10041962 [exp] 767 / 0 AT1G80530 715 / 0.0 Major facilitator superfamily protein (.1) Lus10017480 [exp] 732 / 0 AT1G80530 702 / 0.0 Major facilitator superfamily protein (.1) Lus10028803 [exp] 729 / 0 AT1G80530 707 / 0.0 Major facilitator superfamily protein (.1) Lus10001678 [exp] 625 / 0 AT1G80530 649 / 0.0 Major facilitator superfamily protein (.1) Lus10025053 [exp] 331 / 1e-106 AT4G34950 793 / 0.0 Major facilitator superfamily protein (.1) Lus10034491 [exp] 327 / 3e-105 AT4G34950 788 / 0.0 Major facilitator superfamily protein (.1) Lus10035203 [exp] 315 / 8e-100 AT3G01930 876 / 0.0 Major facilitator superfamily protein (.1.2) Lus10032034 [exp] 309 / 7e-98 AT3G01930 874 / 0.0 Major facilitator superfamily protein (.1.2) Lus10025123 [exp] 306 / 9e-97 AT5G14120 674 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF06813 [poplar] [flax] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Potri.003G012300.1 pacid=42786192 polypeptide=Potri.003G012300.1.p locus=Potri.003G012300 ID=Potri.003G012300.1.v4.1 annot-version=v4.1 ATGTCGAACTTAGTGGTGAAAGGAGGAAGCAGACCTCCATGGGTGGGATTAGCAGCAGCACTATGGGTTGAGATAGCGGCTGGGAATGCATACAACTTCC CACTCTACTCTCCTGCTCTCAAATCAGTAATGGGACTCAATCAGCAGCAGCTAACAATGTTGGGTGTGGCCAATGATATTGGAGAGAATGTGGGATTGCT CCCTGGCATGGCCTGCAACAAGTTCCCTCCCTGGGCTGTCCTCTCTGTTGGTGTTCTTGCTTGTTTCTTGGGCTACGGTGTTCTTTGGCTTGTTGTTAGC CAGACTGTCAAGCCCTTACCTTACTGGCTGTTATGGCTTGCACTTGTTATTGCCACAAATAGCAATGCATGGTTTGGCACAGCTGTGGTTGTGACCAACA TGAGAAACTTCCCTCTCAGCAGGGGCACTGTTTCTGGCATTCTCAAAGGTTGCGCTGGGATCTCAGCTGCAGTATACACAGTGGTATATAGCCTGGTGCT TAAAGGCTCTGCTTCAAATCTCCTGCTCTTTCTTACACTTGTCATTCCCATTTTGTGTTTAGCTATGATGTACTTTATCCGGCCATGTACTCCAGCTTCT GGAGAAGACTCTTCAGAGCATGTCCATTTTCTCTTCACCCAAGCTGCAGTTATTCTACTTGCCATTTATCTCCTCATAACCGCTATAATAGGGACTGTGG TTTCTCTTAGTGATGCTGTTTCCTACATTTTAGTGGCAATCGTGGTTATCTTTTTGATATCTCCTCTTGCAATTCCTGTCAAAATGACCATTTTTCCTTC AAGGCCCAAGAAAAACCCGCCATCTGATTCTTCAGATCATTTGATGTTGGGGGAAGGTGAAACAACTCCAACAGATCCTTTGTTGACACCATCTTCATCT GCGACATCTCTAGGAAGTTTTTATGAGAATGACGATGCTTCAGATGTGGAAATACTTCTTGCTATGGGAGAGGGAGCAGTGAAGAAGAAAAGGAGGCCCA AGAGAGGTGAGGATTTCAAAATTCACGAGGCTCTTATCAAGGCAGATTTTTGGCTTCTTTGGGTGGTATACTTTCTTGGGGTTGGTTCTGGAGTTACTAT TCTCAATAATTTGGCTCAAATTGGGGCTGCTTTTGGTCTTGAGGATACAACAATATTGCTTGCTCTCTTCGGCTTTTGCAATTTTGTTGGCCGCATTGGA TCGGGTGCTGTTTCAGAACATTTTGTCAGGTCAAGAGCAATTCCTCGAACCTTGTTGATGACATGTGCACATATAATTATGGCCATAACGTTCATTCCTT TTGCATTAGCACTCGATGGTATTCTTTACACTGCAACTGCTCTTCTTGGCATCTCTTATGGGATTCTGTATGCTGTAATGGTGCCAACTGCCTCTGAACT TTTTGGCTTGAGACATTTTGGTTTGATATACAACGTTCTGCTGCTAGGCAATCCTGTTGGTGCACTACTTTTCTCAGGTATTCTTGCCGGTTATGTATAC GACGCAGAAACTGCCAGGCAAGGAAGCTCTACTTGTTTAGGTCCTGATTGCTTCAAGATAACATTCCTGGCTCTAGCTGGCTTCTGTGGACTGGGAACCG TCGTGAGCATAATCTTAACAGTTAGAATACGGCCAGTTTACCAAATGCTTTATTCAGGGGGTTCTTACCATCTGCCTCAGAATTTAGGCCATTGA
AA sequence Show only first row Show all	>Potri.003G012300.1 pacid=42786192 polypeptide=Potri.003G012300.1.p locus=Potri.003G012300 ID=Potri.003G012300.1.v4.1 annot-version=v4.1 MSNLVVKGGSRPPWVGLAAALWVEIAAGNAYNFPLYSPALKSVMGLNQQQLTMLGVANDIGENVGLLPGMACNKFPPWAVLSVGVLACFLGYGVLWLVVS QTVKPLPYWLLWLALVIATNSNAWFGTAVVVTNMRNFPLSRGTVSGILKGCAGISAAVYTVVYSLVLKGSASNLLLFLTLVIPILCLAMMYFIRPCTPAS GEDSSEHVHFLFTQAAVILLAIYLLITAIIGTVVSLSDAVSYILVAIVVIFLISPLAIPVKMTIFPSRPKKNPPSDSSDHLMLGEGETTPTDPLLTPSSS ATSLGSFYENDDASDVEILLAMGEGAVKKKRRPKRGEDFKIHEALIKADFWLLWVVYFLGVGSGVTILNNLAQIGAAFGLEDTTILLALFGFCNFVGRIG SGAVSEHFVRSRAIPRTLLMTCAHIIMAITFIPFALALDGILYTATALLGISYGILYAVMVPTASELFGLRHFGLIYNVLLLGNPVGALLFSGILAGYVY DAETARQGSSTCLGPDCFKITFLALAGFCGLGTVVSIILTVRIRPVYQMLYSGGSYHLPQNLGH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80530			Major facilitator superfamily ...		Potri.003G012300 [exp]	0	1
AT5G57970			DNA glycosylase superfamily pr...		Potri.018G106900 [exp]	7.21	0.7310
AT5G64860		DPE1	disproportionating enzyme (.1)		Potri.007G081400 [exp]	7.93	0.7269	DPE1.1
AT3G15650			alpha/beta-Hydrolases superfam...		Potri.001G173700 [exp]	9.59	0.6264
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Potri.011G066800 [exp]	10.09	0.7522
AT2G28900		OEP16, ATOEP16-...	outer envelope protein 16, OUT...		Potri.001G239900 [exp]	10.39	0.7116
AT4G28365		AtENODL3	early nodulin-like protein 3 (...		Potri.001G398800 [exp]	10.95	0.7208
					Potri.009G010450 [exp]	21.09	0.7152
					Potri.014G194201 [exp]	28.35	0.6816
AT1G11820			O-Glycosyl hydrolases family 1...		Potri.011G006100 [exp]	29.22	0.6929
AT4G09970			unknown protein		Potri.013G102300 [exp]	34.20	0.6811

Compare expression of checked genes

Potri.003G012300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.