Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15780 557 / 1e-175 unknown protein AT2G10440 259 / 4e-72 unknown protein AT1G15770 159 / 4e-43 unknown protein AT1G15790 108 / 8e-27 unknown protein AT1G15772 54 / 8e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G204900 [exp] 800 / 0 AT1G15780 575 / 0.0 unknown protein Potri.003G028089 [exp] 394 / 3e-119 AT1G15780 223 / 5e-60 unknown protein Potri.003G014000 [exp] 344 / 1e-106 AT1G15780 157 / 2e-41 unknown protein Potri.001G033400 [exp] 295 / 3e-85 AT1G15780 238 / 3e-66 unknown protein Potri.016G028200 [exp] 275 / 2e-76 AT1G15780 252 / 4e-69 unknown protein Potri.003G025500 [exp] 256 / 3e-76 AT1G15780 128 / 1e-32 unknown protein Potri.006G031200 [exp] 261 / 9e-72 AT1G15780 242 / 1e-65 unknown protein Potri.003G013000 [exp] 238 / 8e-71 AT1G15780 171 / 5e-48 unknown protein Potri.003G028401 [exp] 221 / 2e-64 AT1G15780 162 / 2e-44 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015323 [exp] 697 / 0 AT1G15780 587 / 0.0 unknown protein Lus10025452 [exp] 689 / 0 AT1G15780 248 / 3e-68 unknown protein Lus10025450 [exp] 548 / 0 AT1G15780 454 / 8e-149 unknown protein Lus10015322 [exp] 192 / 2e-50 AT1G15780 164 / 1e-41 unknown protein Lus10025451 [exp] 157 / 4e-41 AT1G15780 137 / 6e-35 unknown protein Lus10026119 [exp] 135 / 1e-35 AT1G15780 128 / 3e-34 unknown protein Lus10025448 [exp] 94 / 7e-22 AT1G15780 80 / 9e-18 unknown protein Lus10015321 [exp] 82 / 1e-16 AT1G15780 78 / 5e-16 unknown protein Lus10023978 [exp] 72 / 2e-14 AT1G15780 71 / 4e-15 unknown protein Lus10012027 [exp] 76 / 2e-13 AT4G12020 102 / 2e-24 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0589 [poplar] [flax] KIX_like PF16987 [poplar] [flax] KIX_2 KIX domain
Representative CDS sequence Show only first row Show all	>Potri.003G012400.7 pacid=42786935 polypeptide=Potri.003G012400.7.p locus=Potri.003G012400 ID=Potri.003G012400.7.v4.1 annot-version=v4.1 ATGGATGCCAATAATTGGAGGCCCACTGCCCCAGGCGGAGAACCTGTTATGGACACAGGTGATTGGAGAACTCAATTGCAGCCTGACTCACGGCAAAGAA TAGTCAACAAAATAATGGAGACATTAAAGAGGCATCTTCCGTTTTCTGGTCAAGAGGGATTACAAGAACTCAAGAAAATTGCCGTACGGTTTGAGGAAAA GATTTATACTGCCGCCACCAATCAGTCTGATTATCTGCGTAAAATATCTCTGAAGATGCTTACAATGGAGACCAAGTCTCAAAATACCATACCCACTGGC AATGGTAACAAAACCCTGGATCCAGGAGCATCTCATAGTATGCCGCCTCAAGTTCACAACCAAGGGCAGTCGCTCCCTAACTCATTGTCCTCTAATCAGT CTCAAGCACGTCAGCAGTTATCACAGAACATGCAGAATAGTATGTCATCTAATGGAGTTCAAAGTTCTGCTGGTTTACAATCAGCAATGCCTTCTGTCTC CGGTTTAACCCAGACTATCCCAAACACTGTTGGACAGAATGCTAACATGCAGAGTATCTCTGGTGTTTCACAGAACTCAGTGGGGAATTCAATGGGACAA GGGATTCCCCCCAATATGTTTGTCAATTCTCAGAGACAAATGCCAGGCAGGCAACAGGTTGTTCCTCCACAGCAACAGCAGCAGTCCCAAAATCCTCAGC AGTATCTTTATCAGCAGCAGATGCAACATCAGCTTTTAAAGCAGAAGCTTCAACAGGGAAATCATCCACACTCACTTGTGCAATCTCACATCCACCAGCA GCAGCAGCAAAATTTGTTACAGCCAAATCAGTTGCAATCTTCTCAGCAATCTGGTTTGCAAACATCAACTGTTATGCAGCCTTCAATGATGCAAACTGTC TCTGGCCTTCAACAGAACCAACCATCTTCTGTTCAACAGTCAACACAACCAATGCACCAGCAACATCCACAATCAGTCCTTAGGCAGCAGCAGCAACAAC CTCAACAGTCTGCTGGTATTCATCAGCAGCAAACACCAATGATGCAGCAGCCACTATTGCCTCCACAACAGCAGCTAATGGGGCAACAATCAAGTACCAC TAACATGTCGCAAAATCAGTTAATTGGACAACAAAACATTGTTGGGGACTTGCAGCAGCAGCAGCAGCAGAGATTGCTAGGGCAGCAGAATAACCTTCAA AATCTGCAGCAGCAGCAGCAGTTAATGACTCAACAAAATAACCTCTCAAGCATGCATCAGCAACAGTTGGCCCCTCAAAGTAATGTCACTGGTTTACAGC AACAGCAGTTGCATGGAGCTCAGCCTGGTAACTCAAGCATGCAATCTAATCAGCACTCTCTACACATGCTGCAACAGCCCAAGGTTACGCTGCAGCAGCA AGCACAACAAAGTGGAAGTGGTTTGTTGCCGAATCAAGGGCAGCAGTCACACTCACAGCTGCCACAGCAGCAATTGATGGCACAGATTCAATCACAGCCT GGACAGCTGCAACAGCAATCAAATCCATTACAACGTGATCTGCAGCAAAGGCTTCAAGCATCAGGCTCCTTGCTTCAACAGCCGAATGTGATTGATCAGC AAAAGCAGTTATATCAACCTCAAAGAGCCCTTCCAGAAACGTCCTCAACATCCCTAGATTCTACAGCAGAGACTGGACATGCAAATGGTGCTGATTGGCA AGAGGAGATCTACCAAAAGATCAAAGTTATGAAGGAAACGTATTTGCCTGAAATAAATGAAATGTACCAGAGAATTGCTACCAAGTTACAGCAGCATGAC CCTCTTCCGCAACAACCGAAGTCAGAACAGCTTGAAAAGCTGAAGTTATTCAAGGTCATGTTGGAGCGCTTGATAGGATTCTTACAGGTCCCTAAAAACA ACATCACACCTAATTTCAAGGAGAAATTGGGTTCCTATGAGAAGCAGATTCTAGGTTTTCTAAACCCAAGCAGATACAGGAAGCCTATTCCTAATCTTCA GCAAGGACAACTTCCCCAACCTCATATTCAACCTATGCAGCAACCCCAATCTCAAGTTCCTCAATTGCAGTCCCATGAAAATCAACTGAATTCCCAGTTG CAATCAATAAATATGCAAGGTTCTGTACCAAAGATGCAGCAGAACAATATGTCAAGCTTGCTGCATAATTCTCTTTCAACTTTATCTGGGGATTCGACGT CACAATCAAACATGATGAATCCAATACAACCAGGCTCCAATTTAGATTCTGGACAAGGAAATGCACTGAGCTCATTGCAGCAGACACCTGTAGGATCTGT ACAACAGAATCTCGTGAGCATTTCCCAACCAACCAATGTTAACACAATGTCAACACAAAGTGGGGTGAGTATGATGCAGCCAAATATGCCCCTTCAGTCG AATTCCAATATGATTCAACACCAGCATCTAAAACAGCAGCAGCAGCATGAACAACATATGCTACAAACACAACAGCTTAAACGAATGCAGCATCGCCAGA ATTTAATGCAGAATCAACAGATGCTGCAGCAGCAGCAGCAATTACACCAGCAAGCCAAGCAGCAGTTGCCTGCACAGATGCAGACACACCAAATTCCACA GCCGCAACAGATGAATGATGTAAATGAGATGAGACAGGGGATTGGAATTAAGCCAGCAGTCTTCCAACAACATCTCCCAACAGCTCAACGCACAGCTTTC CCACGTCAACACATGAAACCTGCACCTTCATTTCCTATTTCTTCACCTCAACTACCTCAGCATGCTTCCCCTCAATTACAACATTCATCTCCTCAGATTG ACCAGCAAAATCTACCGTCTTCTGTAACCAAAACTGGAACACCTCTGCAATCTGCGAACTCGCCTTTTGTTGTCCCATCTCCTTCAACTCCTTTAGCTCC ATCTCCTATGCCAGGAGATTCTGACAAACCAGTTTCTGGTATTTCCTCACTCTTAAATACTGGAAATATTGTACACCAACCATCTGTTGCACAAGCACCG GCTCCATCCCTTGCAATTGGCACTCCTGGGATATCTGCATCACCTTTGCTTGCAGAGTTTACCAGTCCTGATGGTGCTCATGGCGGTGCTTTGACAACTG TTTCTGGCAAGTCAAATGTTACAGAGCAACCACTTGAGCGCTTGATTAAAGCGGTGAAATCTCTGTCTCCCAAAGCACTTAGTGCATCTGTCGGTGACAT TGGCTCCGTTGTAAGTATGATTGACAGAATTGCTGGTTCGGCACCTGGTAATGGATCTAGAGCTGCAGCTGGTGAGGATTTGGTAGCAATGACAAAATGT CGCCTTCAGGCAAGAAATTACATCACCCAAGATGGGATGACTGGATCAAGGAAAATGAGGCGCCATACAAGTGCCATGCCCTTGAATGTTGTATCATCAG CTGGCAGTGTAAGTGACAGTTTTAAACAGTTTACTGGTCCAGAAACTTCTGATTTGGAATCAACTGCAACATCAAGTGTCAAGAGGCCTAGAATTGAGGC CAATCATGCCCTTTTGGAAGAGATAAGGGAAATAAATCAGCGACTTATAGACACGGTAGTTGATATTAGTGATGAAGATGTTGATTCAACTGCAGTAGCT GCTACTGCTGAAGGGGGTGAAGGAACCATTGTCAAATGCTCATTTAGCGCTGTGGCTCTTAGTCAAAATTTGAAATCACAGTATGCTTCAGCGCAAATGT CACCAATTCAGCCCCTCAGATTGCTTGTGCCTACAAATTATCCAAGTTGCTCACCTATACTGTTAGACAGGTTTCCAGTTGAAGTCAGTAAAGAGTACGA GGATCTGTCAATAAAAGCTAAATCCAGGTTTAGCATCTCTCTCCGAAGCCTTTCACAACCCATGTCACTTGGAGAGATAGCAAGGACTTGGGATGTCTGC GCCCGTGTGGTTATTTCAGAGCATGCCCAGCAGAGCGGCGGTGGCACCTTCAGCTCAAAATATGGTTCTTGGGAAAACTGCCTGAGCGCAGCTTGA
AA sequence Show only first row Show all	>Potri.003G012400.7 pacid=42786935 polypeptide=Potri.003G012400.7.p locus=Potri.003G012400 ID=Potri.003G012400.7.v4.1 annot-version=v4.1 MDANNWRPTAPGGEPVMDTGDWRTQLQPDSRQRIVNKIMETLKRHLPFSGQEGLQELKKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQNTIPTG NGNKTLDPGASHSMPPQVHNQGQSLPNSLSSNQSQARQQLSQNMQNSMSSNGVQSSAGLQSAMPSVSGLTQTIPNTVGQNANMQSISGVSQNSVGNSMGQ GIPPNMFVNSQRQMPGRQQVVPPQQQQQSQNPQQYLYQQQMQHQLLKQKLQQGNHPHSLVQSHIHQQQQQNLLQPNQLQSSQQSGLQTSTVMQPSMMQTV SGLQQNQPSSVQQSTQPMHQQHPQSVLRQQQQQPQQSAGIHQQQTPMMQQPLLPPQQQLMGQQSSTTNMSQNQLIGQQNIVGDLQQQQQQRLLGQQNNLQ NLQQQQQLMTQQNNLSSMHQQQLAPQSNVTGLQQQQLHGAQPGNSSMQSNQHSLHMLQQPKVTLQQQAQQSGSGLLPNQGQQSHSQLPQQQLMAQIQSQP GQLQQQSNPLQRDLQQRLQASGSLLQQPNVIDQQKQLYQPQRALPETSSTSLDSTAETGHANGADWQEEIYQKIKVMKETYLPEINEMYQRIATKLQQHD PLPQQPKSEQLEKLKLFKVMLERLIGFLQVPKNNITPNFKEKLGSYEKQILGFLNPSRYRKPIPNLQQGQLPQPHIQPMQQPQSQVPQLQSHENQLNSQL QSINMQGSVPKMQQNNMSSLLHNSLSTLSGDSTSQSNMMNPIQPGSNLDSGQGNALSSLQQTPVGSVQQNLVSISQPTNVNTMSTQSGVSMMQPNMPLQS NSNMIQHQHLKQQQQHEQHMLQTQQLKRMQHRQNLMQNQQMLQQQQQLHQQAKQQLPAQMQTHQIPQPQQMNDVNEMRQGIGIKPAVFQQHLPTAQRTAF PRQHMKPAPSFPISSPQLPQHASPQLQHSSPQIDQQNLPSSVTKTGTPLQSANSPFVVPSPSTPLAPSPMPGDSDKPVSGISSLLNTGNIVHQPSVAQAP APSLAIGTPGISASPLLAEFTSPDGAHGGALTTVSGKSNVTEQPLERLIKAVKSLSPKALSASVGDIGSVVSMIDRIAGSAPGNGSRAAAGEDLVAMTKC RLQARNYITQDGMTGSRKMRRHTSAMPLNVVSSAGSVSDSFKQFTGPETSDLESTATSSVKRPRIEANHALLEEIREINQRLIDTVVDISDEDVDSTAVA ATAEGGEGTIVKCSFSAVALSQNLKSQYASAQMSPIQPLRLLVPTNYPSCSPILLDRFPVEVSKEYEDLSIKAKSRFSISLRSLSQPMSLGEIARTWDVC ARVVISEHAQQSGGGTFSSKYGSWENCLSAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15780			unknown protein		Potri.003G012400 [exp]	0	1
AT1G15780			unknown protein		Potri.001G204900 [exp]	1.41	0.9279
AT1G24300			GYF domain-containing protein ...		Potri.001G326500 [exp]	1.73	0.9231
AT3G32940			RNA-binding KH domain-containi...		Potri.001G008700 [exp]	2.00	0.9195
AT3G26730			RING/U-box superfamily protein...		Potri.014G145300 [exp]	3.87	0.9105
AT3G22380		TIC	time for coffee (.1.2)		Potri.010G089700 [exp]	5.19	0.9029
AT4G01290			unknown protein		Potri.002G163000 [exp]	5.47	0.9005
AT3G57300		ATINO80	INO80 ortholog (.1.2)		Potri.016G043500 [exp]	6.63	0.9000	CHR929
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.007G003400 [exp]	7.48	0.9073	HAC901,Pt-HAC1.4
AT1G72390			unknown protein		Potri.001G165800 [exp]	7.48	0.9047
AT1G17440		CKH1, TAF12b, E...	TBP-ASSOCIATED FACTOR 12B, ENH...		Potri.001G169900 [exp]	7.74	0.8971

Compare expression of checked genes

Potri.003G012400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.