Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15780 171 / 5e-48 unknown protein AT2G10440 92 / 5e-21 unknown protein AT1G15770 77 / 3e-16 unknown protein AT1G15772 51 / 2e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G028401 [exp] 379 / 2e-133 AT1G15780 162 / 2e-44 unknown protein Potri.003G013300 [exp] 261 / 4e-88 AT1G15780 120 / 5e-31 unknown protein Potri.003G028089 [exp] 241 / 8e-74 AT1G15780 223 / 5e-60 unknown protein Potri.003G012400 [exp] 239 / 8e-72 AT1G15780 557 / 2e-175 unknown protein Potri.001G204900 [exp] 213 / 8e-63 AT1G15780 575 / 0.0 unknown protein Potri.003G013900 [exp] 176 / 1e-55 AT1G15780 61 / 3e-11 unknown protein Potri.003G014000 [exp] 114 / 6e-29 AT1G15780 157 / 2e-41 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015323 [exp] 194 / 5e-56 AT1G15780 587 / 0.0 unknown protein Lus10025452 [exp] 192 / 2e-55 AT1G15780 248 / 3e-68 unknown protein Lus10015322 [exp] 159 / 2e-44 AT1G15780 164 / 1e-41 unknown protein Lus10025451 [exp] 134 / 8e-37 AT1G15780 137 / 6e-35 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G013000.6 pacid=42785879 polypeptide=Potri.003G013000.6.p locus=Potri.003G013000 ID=Potri.003G013000.6.v4.1 annot-version=v4.1 ATGCAGAATTGCATGGCATCTAATGGAGTTCAAAGTTATGCTGGTTTACAAGCGGCACCGCCTCCTGTCTCTGGTGTAACCCAGACTATCCCCAACACTG TTGTCCAGAATCCTAACATGCAGAGTATCCCCGGTGTTTCACAGAACTCAGTGGGGAATTCAATGGGACAGGGGATTCCCTCCACTATGTTTGCTAATTC TCAGAGACAAATGCCAGCATCCCTAGATTCTACAGCACAGACTGGACATGCAAATGGCGCTGATTGGCAAGAGGAGATCTATCAAAAGATCAAAGTTATG AAGAAGACTTATTTCCCTGAAATAAATGAAATGTACCAGAGAATTGCTGCCAAGTTACAGCAGCTTGACTCTCTTCCGCAACAACCAAAGTCAGAACAGC TTGAAAAGCTGAAGGTATTCAAGGCCATGTTGGAGTGCTTGATAACATTCTTACAGGTCTCTAAAAACAACATCACACCTAGTTTCAAGGAGAAATTGGG TTCCTATGAGAAGCAGATTGTAAGTTTTCTAAAACCAAGCAGATTCAGGAGGTCAATTCCTAATCTACAGCTAGGACAACTTCCCCAGCCTCATGTGCAA CCTATGCAGCAACCCCAGTCTCCAGTTCCTCAATTGCAGTCCCATGAAAATCAATTAAATCCCCAGTTGCAATCATTGAATGTGCATGGTTCTATACCAA CGATGCAGCAGAACAATATGTCAAGCTTGCAGCATGGTTCTCTTTCATCTTTATCTGGGGTTTCTATGTCACAATCAATCACGATGATGCGAGATGAGAG ATTTTAA
AA sequence Show only first row Show all	>Potri.003G013000.6 pacid=42785879 polypeptide=Potri.003G013000.6.p locus=Potri.003G013000 ID=Potri.003G013000.6.v4.1 annot-version=v4.1 MQNCMASNGVQSYAGLQAAPPPVSGVTQTIPNTVVQNPNMQSIPGVSQNSVGNSMGQGIPSTMFANSQRQMPASLDSTAQTGHANGADWQEEIYQKIKVM KKTYFPEINEMYQRIAAKLQQLDSLPQQPKSEQLEKLKVFKAMLECLITFLQVSKNNITPSFKEKLGSYEKQIVSFLKPSRFRRSIPNLQLGQLPQPHVQ PMQQPQSPVPQLQSHENQLNPQLQSLNVHGSIPTMQQNNMSSLQHGSLSSLSGVSMSQSITMMRDERF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15780			unknown protein		Potri.003G013000 [exp]	0	1
AT3G14460			LRR and NB-ARC domains-contain...		Potri.017G015000 [exp]	8.71	0.8946
AT2G36360			Galactose oxidase/kelch repeat...		Potri.008G024700 [exp]	9.48	0.8574
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Potri.010G049100 [exp]	12.96	0.8680
ATCG01280		ATCG01280.1, YC...	Chloroplast Ycf2;ATPase, AAA t...		Potri.001G152150 [exp]	12.96	0.8517
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Potri.010G215000 [exp]	15.00	0.8104
AT4G17050		UGLYAH	ureidoglycine aminohydrolase (...		Potri.001G150800 [exp]	15.65	0.8383
AT5G19910		MED31	SOH1 family protein (.1.2)		Potri.012G113400 [exp]	15.90	0.8518
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Potri.015G028101 [exp]	16.24	0.8777
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Potri.005G147700 [exp]	17.60	0.8457
AT2G46560			transducin family protein / WD...		Potri.002G173300 [exp]	19.26	0.8252

Compare expression of checked genes

Potri.003G013000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.