Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25470 367 / 1e-110 AtRLP21 receptor like protein 21 (.1) AT1G07390 360 / 3e-107 AtRLP1 receptor like protein 1 (.1.2.3) AT1G58190 345 / 4e-102 AtRLP9 receptor like protein 9 (.1.2) AT1G74190 344 / 5e-102 AtRLP15 receptor like protein 15 (.1) AT5G49290 340 / 5e-101 ATRLP56 receptor like protein 56 (.1) AT1G74180 334 / 3e-98 AtRLP14 receptor like protein 14 (.1) AT1G74170 333 / 1e-97 AtRLP13 receptor like protein 13 (.1) AT3G53240 320 / 4e-94 AtRLP45 receptor like protein 45 (.1) AT1G54470 243 / 2e-66 RPP27 resistance to Peronospora parasitica 27, RNI-like superfamily protein (.1.2) AT2G34930 229 / 3e-62 disease resistance family protein / LRR family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G028557 [exp] 1825 / 0 AT1G07390 388 / 1e-117 receptor like protein 1 (.1.2.3) Potri.003G026308 [exp] 1397 / 0 AT1G74190 423 / 1e-130 receptor like protein 15 (.1) Potri.003G026914 [exp] 1385 / 0 AT1G07390 444 / 1e-137 receptor like protein 1 (.1.2.3) Potri.005G009300 [exp] 1236 / 0 AT1G07390 449 / 9e-140 receptor like protein 1 (.1.2.3) Potri.003G013200 [exp] 1145 / 0 AT2G25470 453 / 6e-144 receptor like protein 21 (.1) Potri.005G013200 [exp] 1103 / 0 AT1G58190 453 / 1e-142 receptor like protein 9 (.1.2) Potri.003G025100 [exp] 1103 / 0 AT1G74190 432 / 2e-135 receptor like protein 15 (.1) Potri.005G006701 [exp] 1048 / 0 AT1G74190 438 / 3e-136 receptor like protein 15 (.1) Potri.005G013800 [exp] 1018 / 0 AT1G74190 432 / 2e-135 receptor like protein 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030068 [exp] 442 / 5e-139 AT5G49290 397 / 3e-124 receptor like protein 56 (.1) Lus10042381 [exp] 365 / 1e-109 AT1G74190 289 / 1e-82 receptor like protein 15 (.1) Lus10027856 [exp] 259 / 4e-72 AT1G74190 272 / 1e-77 receptor like protein 15 (.1) Lus10016384 [exp] 246 / 4e-67 AT2G34930 464 / 5e-148 disease resistance family protein / LRR family protein (.1) Lus10029483 [exp] 223 / 9e-60 AT2G34930 484 / 1e-155 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 223 / 1e-59 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 221 / 4e-59 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10016342 [exp] 218 / 5e-58 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1) Lus10003389 [exp] 216 / 3e-57 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10003387 [exp] 214 / 8e-57 AT1G47890 394 / 3e-120 receptor like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.003G013700.2 pacid=42786029 polypeptide=Potri.003G013700.2.p locus=Potri.003G013700 ID=Potri.003G013700.2.v4.1 annot-version=v4.1 ATGATGATGAAAAGAATGGGGGCTTGGATGTTGCTAGCAATATTATTGACTTTGGTTGGCGAATGGTATGGTCGTTGTTATGGGTGTTTGGAGGAAGAGA GGATTGGTCTCTTGGAGATCCAATCTTTGATCAACCCACATGGCGTTTCCTGGAGAGATCATTGGGTGGACACCAATAGTAATTGTTGTGAGTGGCGTGG GATCGAGTGTGATAACACTACAAGGCGAGTGATCCAGGTCTCTCTTTTTGGTGAAAGAGATGAGAGCTTGGGCGATTGGGTTCTCAACGCATCTTTGTTT CAGCCTTTTAAAGAATTGCAAAGTCTTGATTTGGGATGGAATGGATTGGTTGGTTGCTTGGAGAATGAAGGCTTCGAAGTCCTATCATCAAAACTGAGCA ATCTTGACCTACGTGTTAACCAATTTACTAATGATAAAAGCATTTTGTCATGTTTCAATGGTAACCTTTCCACTCTCAAGTCTTTGGATCTTTCACACAA TGGGTTGACAGGTGGATCAGGAGGTAGCTTCTATGGTTTCAAAGTCTTGTCATCAAGGTTGAAAAAGCTGGAGAACCTTCTTCTATGGGGGAATCAATTC AACGATAGCATTTGTCCATCTCTAACTGGGTTTTCATCCCTCAAGTCTTTAGATCTTTCACACAATCAGCTGACAGGATCAGGTCTCAAAGTCTTGTCAT CAAGGTTGAAAAAGCTGGAGAACCTTCATCTATGGGGGAATCAATACGACGAAAGCATTTTTCCATCTCTAACTGGATTTTCATCTCTCAAGTCTTTGGA TCTGTCGTACAATATGTTGACAGGATCAGGTTTTGAGATCATATCATCACATTTGGGGAAACTCGAGAACCTGGACCTGAGCTCTAATAATATATTCAAC GACAACATTTTATCACATCTGCGTGGATTTTCTTCTCTCAAGTCTTTAAATCTATCATTTAATGAGTTGACAGGATCGACGACTGTCAATGGGACTTTCT TCAATTCTAGCACCCTTGAAGAATTGCATCTAGATCATACTTCTCTCCCAATAAACTTTCTCCAGAACATTGGAGCATTGCCTGCTCTTCAAGTCTTGTC TGTTGGTGGATCTGACCTCAATGGCGCCTTACCCGCTCAAGGTTGGTGTGAATTGAAGAATCTGAAGCAGTTAGATATCTCTGGAAATAATTTAGGAGGT TCACTCCCAGATTGTATGGGAAACTTGTCATCTTTACAACTATTAGATGTTTCTGAAAACCACTTTACTGGAAATATTGCCTCTAGTCCCCTTACCAACC TCATATCCCTTGAATTCCTCTCACTATCAAATAACCTCTTTGAAGTTCCCACTTCAATGAAGCCTTTTTTGAACCACTCAAGCCTCAAGTTCTTCTCTAG TGAGAACAACAAACTAGTAGCAGATCCTGCTGCCTTTCATGATTTGATTCCAAAGTTCCAACTAGTCTTTCTTAGCTTGTCAAAAACAACGGAAGCACTC AATGTAGAAATTCCTAACTTCCTCTATTACCAATACCACTTAAGATTCCTTCATCTCTCCCACAACAACATCACCGGAATGTTTCCATCGTGGTTGCTTA AGAACAATACACGATTGGAGCAATTATATTTGAGCGAGAACTCCTTTGTTGGTACTTTGCAGTTGCAAGATCACCTATATCCAAATATGACCGAATTAGA TATATCCAACAACAACATGAGCGGTCAAATTCCAAAAGATATTTGTTTGATCTTTCCAAATCTACAAACCTTAATGATGGCTAAGAATGGATTCACAGGT TGTATTCCTTCTTGTTTAGGAAATATTAGCTCTTTGGAAATGTTAGATTTATCCAACAATCAATTGTCCACAGTAAAACTAGGACAACTAACAACATTAT TGTTTCTCAACCTGTCAAACAACAATTTGGGTGGTAACAACTTTTGGGGTCAGATATCAGATTTTCCATTATATGGGTGGAAAAAGTGGATTGTATTGGA TTTGAGTTACAATCAATTTTCAGGCATGCTTCCAAGGTGGTTCGTCAATTCTACGGACCTTAGAGTAATTAATTTGTCCAAAAATCATTTTAAGGGTCCG ATCCATAGAGACTTTTGTAAGCTTGGCCACCTTGAGTATTTGGACCTTTCTGAGAACAACTTGTCTGGATATATACCATCTTGTTTTAGTCCACCATCTC TAATCTATGTGCATCTATCCAAAAATAGATTGAGTGGTCCATTAACATATGGATTTTCTAACAGCTCTTCCCTGGTTACGATGGATCTTCGAGATAACAG CTTCATCGGCTCCATTCCAAATTGGATTGGCAATCTTTCATCATTGAGTGTTCTTCTTCTAAGGGCTAATCACTTTGATGGTGAGCTCCCTGTTCAGTTA TGCTTGTTAGAACAGTTAAGCATTTTGGATGTTTCAAAAAACCAGCTCTCTGGTACAATACCATCATGTTTGGGCAATCTTACTTTCATGGCAAGTTCCC AGAAAGCGTTTGTGGATCTCAATGTTGGTTTTGAATCATGGTCCATAGAAAGAGCTTATTATGAAACAATGGGTCCACCACTAGTTAATAGTATGTACAG CTTGGGAAAGGATTTTATGGTTAACTTTACAGAAGTGATAGAATTTACAACTAAAAATATGTATTATTGTTACAAGGGGAAGATTCTCGGCTACATGTCT GGTATTGATCTCTCCAATAACAACTTCGTAGAAGCAATCCCACCAGAATTTGGAAACTTAATTGAGTTACTATCATTAAACTTATCACACAACAATCTCA CTGGATCTGTCCCTGCAACATTCTCAAACCTAAAGCAGATTGAGAGTTTGGATCTTTCTTACAACAACTTGAATGGTGTCATCCCTCCACAACTTACTGA AATTACCATGCTGGAAGTTTTTAGTGTGGCACACAATAACTTGTCAGGTAAGACACCTGAGAGAAAATTTCAATTTGGGACCTTCGATGAAAGTTGTTAC GAAGGAAATCCTTTCTTGTGTGGACCTCCATTGCGAAACAATTGTAGTGAGGAAGCAGTGTCATCTCAGCTAGTGCCTGATGATGAACAAGGAGATGATG GTTTCATAGACATTGACTTTTTCTACATCAGTTTTGGTGTATGTTACACAGTTGTGGTGATGACGATTGCAATAGTTCTCTACATCAATCCATATTGGCG ACGCAGGTGGTTGTACTTCATTGAAGACTGCATAGATACTTGCTACTATTTTGTGGTGGCTAGTTTTCGCAAGTTCTCCAACTTCAGAAGGTGA
AA sequence Show only first row Show all	>Potri.003G013700.2 pacid=42786029 polypeptide=Potri.003G013700.2.p locus=Potri.003G013700 ID=Potri.003G013700.2.v4.1 annot-version=v4.1 MMMKRMGAWMLLAILLTLVGEWYGRCYGCLEEERIGLLEIQSLINPHGVSWRDHWVDTNSNCCEWRGIECDNTTRRVIQVSLFGERDESLGDWVLNASLF QPFKELQSLDLGWNGLVGCLENEGFEVLSSKLSNLDLRVNQFTNDKSILSCFNGNLSTLKSLDLSHNGLTGGSGGSFYGFKVLSSRLKKLENLLLWGNQF NDSICPSLTGFSSLKSLDLSHNQLTGSGLKVLSSRLKKLENLHLWGNQYDESIFPSLTGFSSLKSLDLSYNMLTGSGFEIISSHLGKLENLDLSSNNIFN DNILSHLRGFSSLKSLNLSFNELTGSTTVNGTFFNSSTLEELHLDHTSLPINFLQNIGALPALQVLSVGGSDLNGALPAQGWCELKNLKQLDISGNNLGG SLPDCMGNLSSLQLLDVSENHFTGNIASSPLTNLISLEFLSLSNNLFEVPTSMKPFLNHSSLKFFSSENNKLVADPAAFHDLIPKFQLVFLSLSKTTEAL NVEIPNFLYYQYHLRFLHLSHNNITGMFPSWLLKNNTRLEQLYLSENSFVGTLQLQDHLYPNMTELDISNNNMSGQIPKDICLIFPNLQTLMMAKNGFTG CIPSCLGNISSLEMLDLSNNQLSTVKLGQLTTLLFLNLSNNNLGGNNFWGQISDFPLYGWKKWIVLDLSYNQFSGMLPRWFVNSTDLRVINLSKNHFKGP IHRDFCKLGHLEYLDLSENNLSGYIPSCFSPPSLIYVHLSKNRLSGPLTYGFSNSSSLVTMDLRDNSFIGSIPNWIGNLSSLSVLLLRANHFDGELPVQL CLLEQLSILDVSKNQLSGTIPSCLGNLTFMASSQKAFVDLNVGFESWSIERAYYETMGPPLVNSMYSLGKDFMVNFTEVIEFTTKNMYYCYKGKILGYMS GIDLSNNNFVEAIPPEFGNLIELLSLNLSHNNLTGSVPATFSNLKQIESLDLSYNNLNGVIPPQLTEITMLEVFSVAHNNLSGKTPERKFQFGTFDESCY EGNPFLCGPPLRNNCSEEAVSSQLVPDDEQGDDGFIDIDFFYISFGVCYTVVVMTIAIVLYINPYWRRRWLYFIEDCIDTCYYFVVASFRKFSNFRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.003G013700 [exp]	0	1
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.003G028557 [exp]	1.41	0.9522
AT4G03400		GH3-10, DFL2	DWARF IN LIGHT 2, Auxin-respon...		Potri.013G144300 [exp]	4.58	0.9167	10,Pt-DFL2.2
AT4G22980			unknown protein		Potri.001G111600 [exp]	4.89	0.9069
AT1G75800			Pathogenesis-related thaumatin...		Potri.001G222100 [exp]	5.65	0.9000
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.001G311300 [exp]	7.74	0.8959
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.005G008800 [exp]	12.72	0.8986
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.003G013200 [exp]	15.09	0.9029
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Potri.004G230800 [exp]	17.32	0.9041
AT3G60370			FKBP-like peptidyl-prolyl cis-...		Potri.012G012600 [exp]	21.74	0.8976
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.003G026308 [exp]	21.90	0.8932

Compare expression of checked genes

Potri.003G013700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.