Plant FIBer expression Database

Potri.003G014000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G15780 157 / 1e-41 unknown protein
AT2G10440 71 / 6e-13 unknown protein
AT1G15770 51 / 5e-07 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G012400
[exp]
341 / 7e-106 AT1G15780 557 / 2e-175 unknown protein
Potri.001G204900
[exp]
286 / 2e-86 AT1G15780 575 / 0.0 unknown protein
Potri.003G028089
[exp]
255 / 2e-76 AT1G15780 223 / 5e-60 unknown protein
Potri.003G025500
[exp]
164 / 9e-47 AT1G15780 128 / 1e-32 unknown protein
Potri.003G028401
[exp]
114 / 1e-28 AT1G15780 162 / 2e-44 unknown protein
Potri.003G013300
[exp]
109 / 2e-27 AT1G15780 120 / 5e-31 unknown protein
Potri.003G013000
[exp]
108 / 9e-27 AT1G15780 171 / 5e-48 unknown protein
Potri.006G031200
[exp]
44 / 0.0002 AT1G15780 242 / 1e-65 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025450
[exp]
206 / 3e-62 AT1G15780 454 / 8e-149 unknown protein
Lus10015323
[exp]
213 / 1e-60 AT1G15780 587 / 0.0 unknown protein
Lus10025452
[exp]
205 / 8e-58 AT1G15780 248 / 3e-68 unknown protein
Lus10015322
[exp]
64 / 2e-10 AT1G15780 164 / 1e-41 unknown protein
Lus10025451
[exp]
50 / 2e-06 AT1G15780 137 / 6e-35 unknown protein
PFAM info
Representative CDS sequence
>Potri.003G014000.1 pacid=42784581 polypeptide=Potri.003G014000.1.p locus=Potri.003G014000 ID=Potri.003G014000.1.v4.1 annot-version=v4.1
ATGTTGGAGCGCTTGATAACATTCTTACAGGTCTCTAAAAACAACATCACACCTAATTTCAAGGAGAAATTGGGTTTCTATGAGAAGCAGATTGTAGGTT
TTGTAAACCCAAGCAGATACAGGAAGCCTATTCCTAATCTACAGCAAGGACAACCTCCCCAACCTCATATTCAACCTATGCAGCAACCCCAATCTCAAGT
TCCTCAATTGCAGTCCCATGAAAATCAACTCAATCCCCAGTTGCAATCAATGAATATGCAAGGTTCTGTACCAAAGATGCAGCAGAACAATATGTCAAGC
TTGCTGCATAATTCTCTCTCAACTTTATCTGGGGATTCGACGTCACAATCAAACATGATGAATCCAATACAACCAGGCTCCAATTTAGATTCTGGACAAG
GAAATGCACTGAGCTCATTGCAGCAGACACCTGTAGGATCTGTACAGCAGAATCTCGTGAGCATTTCCCAACCAACCAATGTTAACACAATGTCAACACA
AAGTGGGGTGAGTATGCTGCAGCCAAATATTCCCCTTCAGTCGAATTCCAATAAGATTCAACACCAGCATCTAAAACAGCAGCAGCAGCAGCAGCAGCAT
GAACAACAGATGCTACAAACACAACAGCTTAAACGATTGCAGCAACGCCAGAATTTAATGCAGAATCAACAGATGCTGCAGCAGCAGCAATTACACCAGC
AAGCCAAGCAGCAGTTGCGTGCACAGATGCAGACGCACCAAATTCCACAGCCGCAACAGATGAATGATGTAAATGAGATGAGACAGGGGATTGGAATTAA
GCCAGCAGTCTTCCAACAACATCTCCCAACAGGTCAACGCACAGCTTTCCCACGTCAACACATGAAACCAGCACCTTCATTTCCTATTTCTTCACCTCAA
CTACCTCAGCATGCTTCCCCTCAATTACAACATTCATCTCCTCAGATTGACCAGCAAAATCTACCGTCTTCTGTAACCAAAACTGGAACACCTCTGCAAT
CTGCGAACTCGCCTTTTGTTGTCCCATCTCCTTCAACTCCTTTAGCTCCATCTCCTATGCCAGGAGATTCTGACAAACCAGTTTCTGGTATTTCCTCAAT
CTTAAATACTGGAAATATTGTACACCAACCATCTGTTGCACAAGCACAGGCTCCATCCCTTGCAGTTGGCACTCCTGGGATATCTGCATCACCTTTGCTT
GCAGAGTTTACCAGTCCTGATGGTGCTCATGGCGGTGCTTTGACAACTGTTTCTAGCAAGTCAAATGTTACAGAGCAACCACTTAAGTAA
AA sequence
>Potri.003G014000.1 pacid=42784581 polypeptide=Potri.003G014000.1.p locus=Potri.003G014000 ID=Potri.003G014000.1.v4.1 annot-version=v4.1
MLERLITFLQVSKNNITPNFKEKLGFYEKQIVGFVNPSRYRKPIPNLQQGQPPQPHIQPMQQPQSQVPQLQSHENQLNPQLQSMNMQGSVPKMQQNNMSS
LLHNSLSTLSGDSTSQSNMMNPIQPGSNLDSGQGNALSSLQQTPVGSVQQNLVSISQPTNVNTMSTQSGVSMLQPNIPLQSNSNKIQHQHLKQQQQQQQH
EQQMLQTQQLKRLQQRQNLMQNQQMLQQQQLHQQAKQQLRAQMQTHQIPQPQQMNDVNEMRQGIGIKPAVFQQHLPTGQRTAFPRQHMKPAPSFPISSPQ
LPQHASPQLQHSSPQIDQQNLPSSVTKTGTPLQSANSPFVVPSPSTPLAPSPMPGDSDKPVSGISSILNTGNIVHQPSVAQAQAPSLAVGTPGISASPLL
AEFTSPDGAHGGALTTVSSKSNVTEQPLK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G15780 unknown protein Potri.003G014000
[exp]
0 1
AT2G33860 ARF ARF3, ETT ETTIN, AUXIN RESPONSE TRANSCRI... Potri.011G059101
[exp]
14.83 0.8073
AT1G31870 unknown protein Potri.001G147100
[exp]
18.43 0.7668
AT3G22970 Protein of unknown function (D... Potri.002G046300
[exp]
20.49 0.7247
AT5G45600 TAF14b, GAS41 TBP-ASSOCIATED FACTOR 14B, GLI... Potri.007G012700
[exp]
20.49 0.7979
AT5G61580 PFK4 phosphofructokinase 4 (.1.2) Potri.001G079450
[exp]
34.64 0.7547
Potri.012G030301
[exp]
35.49 0.7844
AT1G55790 Domain of unknown function (DU... Potri.003G101200
[exp]
38.20 0.7080
AT2G38440 ITB1, DIS3, SCA... IRREGULAR TRICHOME BRANCH1, S... Potri.006G105800
[exp]
43.08 0.7149 WAVE4.1
AT1G60160 Potassium transporter family p... Potri.008G147300
[exp]
43.42 0.7262
AT5G54010 UDP-Glycosyltransferase superf... Potri.017G041900
[exp]
50.33 0.7743

Potri.003G014000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.