Plant FIBer expression Database

Potri.003G014056 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G044300
[exp]
302 / 2e-91 ND /
Potri.001G038975
[exp]
234 / 8e-72 AT1G71770 45 / 5e-05 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.003G014056.1 pacid=42784792 polypeptide=Potri.003G014056.1.p locus=Potri.003G014056 ID=Potri.003G014056.1.v4.1 annot-version=v4.1
ATGTCCCAGCTAAACACCTCGCTCCACCCCCCCCCCCAACGCACCACCTACACGGCTCCTCCAAAATCCTCAGACCACCATGCTAAACACCTTTCTCAAA
ACAACATAACAACCTCACCTTCTCAAAAATTTCCGGATACAAACCTTCCCATACCTGTTCCATCCTTTGCACCTACCTGCAAAACCCCTGTCCCTGCACC
CTGTCCCTCCATCACCAATGATGCAGCAGAACATGTTAAGCTGTTCTTTGAGAGATTTCCTTCATGGGTGGACTATCAAGATCTGAAAAGGGCTTTTTTC
AAACTTGGCCGGGTTATCAAACTTTTTGTATCAAAGCGAAAAACTGTTCTTGGAAGACGCTTTGGATTTGTGGACATTTCATCCTCCTTATCTGTCTCAA
CTCTCTGTGATCAAGCCAGCCGGATTTGGTTTGATACATACAAACTAATAGTGAACCCAGCTAAACATCACTCCCTTAAAACTTCCCCTTCACCACCAAA
ACACGTACCCAAGCCTGCAACACCATACCACCCCCAGCTTTCTTTGATAGATCATAGATCTTTTGCTGAGGTACTCACAAACACAAAACCTCAAATAGCC
ACTACGAGAAGAAGAATGGTGCAATATGTATCCACGGAGGAAGATAAGGAATGGTTATATAGGAGCTTGGTAGGAAATATTCTGCCAAATGTTGACGTCG
CAACCCTGGAGGCAACGATATTGAAATCAATTGCTAATACTGTGAGCTTCAGATTCCTAGGAGCTAGTCAGGTGATCATCACCTTTACGGACCAGTTGGC
TTCAAAGAAAGAACAAGACAATGAGGGGTCCATTTTGAAATCACTACTCAGCAACCTTAGACAGTGGGAAGGAAGGACTAGAGCTTATGATAGATTTGCT
TGGATAGCCATCTTTGGCTTACCAATGGAAGGTTGGAACAGAAACTGCTTTGACACTATTCTGCAGAGTTGGGGAACTATTGCTGGCTACGACACAACAT
GTGTTAGTCAGGGGTCAATATCAGGTATCAGGGTTCTTATTAGAACCATAAAAATGGAACCTTTGCATGATGAGGTGAGTCTCAAGCTTGACGGAATACA
AGTTGAGGTCCTTTTGAATGAAATCAAGGGTGAGTTCATCCCTTCCCTCACAACAGTCAAACACTCTATGGACGTCTCTCTTTACACAGAATCTGTGCTA
TCCGATGATGAAGAAGAGCAAACGGACACTATCTCTGCAGCAACAATCCCCAGGGCTACAAGACAAAATACTGAGTTTGAATTCATTTGTACGTTGGGCA
ATCAAGATCAGAACGACAGGACATTTCTCAACACTGGCATATCACCACTGTACCTGCATCCAGAAATTACGGAATTCTGCAGCCATGCAATTTTACCTGA
AGAGCTGGTGTACGAAGACGGTAACCATTTGGCTTTGGTACTATATGATTGTGCTGGGGTGGCTACAGCTGATGTCAGAGAGGGAGATGAGCAACAAGTC
GTGTGTATGCTGGAAAGAGATGGGCTGGATCAGCAGAAGGGTTATAATAGTGGTGATGTGAAGAAGATGGGCCGGGAAAAAAAGCAGAAGCCCTTCAGAT
TGGACCAACATAAGGGTAATAGTGGTAGCTCAAGCATTGGGCCATCTTTTGCTAATTTTATTATCCCCATTGCAGACCAAACTGAACTCTCTGATCTAGA
ATTGCAAAATAGGAGATCTCAAAGGAACAAAGCAAAGAAGCTGTCACGTAAAGCACCGACTGTGAAGAGAAGAAAACCACGAAAAATGGGAAATCAAAGT
TCCAAGAAAACTGAGTTAGGCATTATTGATTACTCTGTCTCTGATAATGGAATCATGAATAGAAATGTCATTATTCGATCTGGGAAGGAAATAGCTGGCG
AAGATGAGGTCAGCAGTTCACACTCTCTTATCTCTCCAACATCTAGTGATCCGACACGTGAACCATTACAACCTGACCCCAGGGAAGAAGCAACTGCTTG
CTGGGATGTGGGAAAAGCGGTATTGCAAGTCCATGATGAAAGCCACCTCATGACACAGACACTGCAGAGTTTTATAGAAAAAGAGCAAGAGGAGTGGATG
AGAAGGAAGGAGCAGTAA
AA sequence
>Potri.003G014056.1 pacid=42784792 polypeptide=Potri.003G014056.1.p locus=Potri.003G014056 ID=Potri.003G014056.1.v4.1 annot-version=v4.1
MSQLNTSLHPPPQRTTYTAPPKSSDHHAKHLSQNNITTSPSQKFPDTNLPIPVPSFAPTCKTPVPAPCPSITNDAAEHVKLFFERFPSWVDYQDLKRAFF
KLGRVIKLFVSKRKTVLGRRFGFVDISSSLSVSTLCDQASRIWFDTYKLIVNPAKHHSLKTSPSPPKHVPKPATPYHPQLSLIDHRSFAEVLTNTKPQIA
TTRRRMVQYVSTEEDKEWLYRSLVGNILPNVDVATLEATILKSIANTVSFRFLGASQVIITFTDQLASKKEQDNEGSILKSLLSNLRQWEGRTRAYDRFA
WIAIFGLPMEGWNRNCFDTILQSWGTIAGYDTTCVSQGSISGIRVLIRTIKMEPLHDEVSLKLDGIQVEVLLNEIKGEFIPSLTTVKHSMDVSLYTESVL
SDDEEEQTDTISAATIPRATRQNTEFEFICTLGNQDQNDRTFLNTGISPLYLHPEITEFCSHAILPEELVYEDGNHLALVLYDCAGVATADVREGDEQQV
VCMLERDGLDQQKGYNSGDVKKMGREKKQKPFRLDQHKGNSGSSSIGPSFANFIIPIADQTELSDLELQNRRSQRNKAKKLSRKAPTVKRRKPRKMGNQS
SKKTELGIIDYSVSDNGIMNRNVIIRSGKEIAGEDEVSSSHSLISPTSSDPTREPLQPDPREEATACWDVGKAVLQVHDESHLMTQTLQSFIEKEQEEWM
RRKEQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.003G014056
[exp]
0 1
Potri.004G011101
[exp]
3.46 0.8623
Potri.001G172450
[exp]
3.46 0.8425
Potri.001G276904
[exp]
4.24 0.8606
AT1G17070 GC-rich sequence DNA-binding f... Potri.019G043200
[exp]
4.35 0.8830
Potri.002G200150
[exp]
6.32 0.8467
AT5G57070 hydroxyproline-rich glycoprote... Potri.006G145900
[exp]
6.63 0.7986
AT1G73460 Protein kinase superfamily pro... Potri.012G039700
[exp]
8.30 0.8277
Potri.002G220667
[exp]
12.24 0.8615
AT5G05450 P-loop containing nucleoside t... Potri.010G184132
[exp]
12.48 0.7964
Potri.004G044750
[exp]
13.74 0.8204

Potri.003G014056 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.