Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15780 118 / 1e-32 unknown protein AT1G15790 88 / 1e-23 unknown protein AT2G10440 45 / 5e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G028245 [exp] 155 / 1e-51 AT1G15780 110 / 4e-30 unknown protein Potri.003G026510 [exp] 135 / 5e-43 AT1G15780 160 / 2e-46 unknown protein Potri.003G025200 [exp] 132 / 6e-42 AT1G15780 139 / 2e-39 unknown protein Potri.003G028089 [exp] 133 / 7e-38 AT1G15780 223 / 5e-60 unknown protein Potri.001G204900 [exp] 131 / 2e-37 AT1G15780 575 / 0.0 unknown protein Potri.003G012400 [exp] 131 / 3e-37 AT1G15780 557 / 2e-175 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025452 [exp] 124 / 1e-34 AT1G15780 248 / 3e-68 unknown protein Lus10015323 [exp] 122 / 3e-34 AT1G15780 587 / 0.0 unknown protein Lus10025448 [exp] 82 / 2e-21 AT1G15780 80 / 9e-18 unknown protein Lus10015321 [exp] 73 / 5e-17 AT1G15780 78 / 5e-16 unknown protein Lus10015322 [exp] 65 / 7e-14 AT1G15780 164 / 1e-41 unknown protein Lus10012027 [exp] 64 / 1e-13 AT4G12020 102 / 2e-24 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) Lus10023978 [exp] 54 / 1e-10 AT1G15780 71 / 4e-15 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0589 [poplar] [flax] KIX_like PF16987 [poplar] [flax] KIX_2 KIX domain
Representative CDS sequence Show only first row Show all	>Potri.003G014156.1 pacid=42785684 polypeptide=Potri.003G014156.1.p locus=Potri.003G014156 ID=Potri.003G014156.1.v4.1 annot-version=v4.1 ATGGACACGGGTGATTGGAGAATTCAAATGCAGCCTGACTCACGGAAAAGAATAGTCGACAAAATAATGGAGACATTAAAGAGGCATCTTCTGTTTTCTG GTCAGGAGGGATTACAAGAACTCAAGAAAATTGCTATACGGCTTGAGGAAAAGATTTATACTACCGCCACCAATCAGTCTGATTATTTGCGTAAAATATC ACTGGAGATTCTTTCGATGGAGATCAGGTCTTAA
AA sequence Show only first row Show all	>Potri.003G014156.1 pacid=42785684 polypeptide=Potri.003G014156.1.p locus=Potri.003G014156 ID=Potri.003G014156.1.v4.1 annot-version=v4.1 MDTGDWRIQMQPDSRKRIVDKIMETLKRHLLFSGQEGLQELKKIAIRLEEKIYTTATNQSDYLRKISLEILSMEIRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15780			unknown protein		Potri.003G014156 [exp]	0	1
AT1G07910		ATRNL, RNL, AtR...	ARABIDOPSIS THALIANA RNA LIGAS...		Potri.016G083100 [exp]	7.48	0.7083
AT4G01400			unknown protein		Potri.014G105900 [exp]	10.09	0.7780
AT1G15780			unknown protein		Potri.003G028245 [exp]	12.00	0.7430
AT1G19340			Methyltransferase MT-A70 famil...		Potri.014G041400 [exp]	14.56	0.6463
AT3G58790		GAUT15	galacturonosyltransferase 15 (...		Potri.014G142000 [exp]	15.49	0.6542
AT3G47640	bHLH	PYE, bHLH047, P...	POPEYE, basic helix-loop-helix...		Potri.003G074400 [exp]	20.04	0.6362
AT4G25610	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.012G143200 [exp]	21.81	0.6676
AT1G52320			unknown protein		Potri.001G181100 [exp]	23.87	0.7071
AT3G51050			FG-GAP repeat-containing prote...		Potri.007G017600 [exp]	24.26	0.7006
AT5G15640			Mitochondrial substrate carrie...		Potri.008G100100 [exp]	24.71	0.7126

Compare expression of checked genes

Potri.003G014156 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.