Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10950 897 / 0 AtTMN1 transmembrane nine 1 (.1) AT1G14670 396 / 5e-131 Endomembrane protein 70 protein family (.1) AT2G01970 395 / 1e-130 Endomembrane protein 70 protein family (.1) AT5G37310 391 / 4e-129 Endomembrane protein 70 protein family (.1) AT1G08350 319 / 3e-101 Endomembrane protein 70 protein family (.1.2) AT3G13772 273 / 2e-83 AtTMN7 transmembrane nine 7 (.1) AT2G24170 273 / 3e-83 Endomembrane protein 70 protein family (.1) AT1G55130 265 / 4e-80 AtTMN6 transmembrane nine 6, Endomembrane protein 70 protein family (.1) AT5G25100 252 / 3e-75 Endomembrane protein 70 protein family (.1.2) AT5G10840 249 / 3e-74 Endomembrane protein 70 protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G218300 [exp] 972 / 0 AT1G10950 920 / 0.0 transmembrane nine 1 (.1) Potri.017G144181 [exp] 395 / 1e-130 AT5G37310 979 / 0.0 Endomembrane protein 70 protein family (.1) Potri.017G144241 [exp] 394 / 3e-130 AT5G37310 989 / 0.0 Endomembrane protein 70 protein family (.1) Potri.004G075450 [exp] 382 / 2e-125 AT5G37310 953 / 0.0 Endomembrane protein 70 protein family (.1) Potri.012G042300 [exp] 328 / 9e-105 AT1G14670 762 / 0.0 Endomembrane protein 70 protein family (.1) Potri.004G203200 [exp] 285 / 3e-88 AT1G08350 671 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.018G018400 [exp] 265 / 5e-80 AT5G10840 1070 / 0.0 Endomembrane protein 70 protein family (.1) Potri.003G038700 [exp] 262 / 6e-79 AT3G13772 1085 / 0.0 transmembrane nine 7 (.1) Potri.006G184200 [exp] 259 / 4e-78 AT2G24170 961 / 0.0 Endomembrane protein 70 protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001368 [exp] 908 / 0 AT1G10950 990 / 0.0 transmembrane nine 1 (.1) Lus10001291 [exp] 906 / 0 AT1G10950 1000 / 0.0 transmembrane nine 1 (.1) Lus10012697 [exp] 850 / 0 AT1G10950 947 / 0.0 transmembrane nine 1 (.1) Lus10015463 [exp] 823 / 0 AT1G10950 910 / 0.0 transmembrane nine 1 (.1) Lus10031308 [exp] 397 / 2e-131 AT2G01970 1061 / 0.0 Endomembrane protein 70 protein family (.1) Lus10031876 [exp] 396 / 5e-131 AT2G01970 1059 / 0.0 Endomembrane protein 70 protein family (.1) Lus10042286 [exp] 389 / 4e-128 AT2G01970 1061 / 0.0 Endomembrane protein 70 protein family (.1) Lus10026371 [exp] 323 / 2e-101 AT2G01970 912 / 0.0 Endomembrane protein 70 protein family (.1) Lus10004873 [exp] 293 / 2e-91 AT1G08350 668 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10037643 [exp] 265 / 3e-80 AT3G13772 1134 / 0.0 transmembrane nine 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02990 [poplar] [flax] EMP70 Endomembrane protein 70
Representative CDS sequence Show only first row Show all	>Potri.003G015300.2 pacid=42784869 polypeptide=Potri.003G015300.2.p locus=Potri.003G015300 ID=Potri.003G015300.2.v4.1 annot-version=v4.1 ATGTCCTCAGCAACCACTGCTCGATCCCTTCCTCTCCTCGCCTTCATTTCCCTCCTTATCCTCTCTCCCGCTCTCGCCTTCGACGCAGATCACAGGTATG GACAAGAGGAACCCGTTAAACTATGGGTAAATAAAGTGGGTCCTTATAACAATCCACAAGAGACATACAATTATTACAGCCTTCCATTTTGCCATCCATC TGGTGATGTTGCTACACACAAATGGGGTGGCCTCGGTGAGGTCCTTGGTGGCAATGAGCTTATTGATAGCCAGATTGACATAAAGTTTGGGAAGAATGTG GACAAAGGTGTCACTTGTCAGCTTGAGCTTGATGAAGCAAAGGTCAAACAATTCAAGGATGCAATTGAGAACAATTATTGGCTTGAATTCTTTGTGGATG ATCTGCCATTATGGGGGTTTGTTGGTGAATTGCGTCCTGATAAGAATGGTGAAAATGGCAAGCATTTCCTTTTCACGCACAAGAGCATTACTATCCAATA TAATAAAGATCAGATTATTCACGTCAATCTCACACAAGAAAATGCAAAGCCCCTTGAATCTGGGAGAATTTTGGACTTGACATACTCTGTCAAATGGAGT TTGACTAATGTCAGTTTTGCACGTCGCTTTGATGTTTATTTGGACTACCCCTTCTTTGAGCATCAGATCCATTGGTTTTCCATCTTCAATTCATTCATGA TGGTTATCTTTCTCACCGGTTTAGTGTCAATGATTTTGATGCGGACTCTTAGAAATGACTATGCAAAATATGCTCGGGAAGATGATGACCTTGTGGAATC TCTGGAAAGAGATGTTAGTGAGGAGACTGGTTGGAAACTTGTTCATGGAGATGTTTTCCGGCCACCTCGCAGTATGGTTCTTCTCTCAGCTGTTGTTGGA ACAGGTGCTCAGCTAGCGTTGCTTGTGCTTCTTGTCATCTTGATGGCAATTGTTGGAACGTTGTATGTCGGGAGAGGAGCTATTGTCACGACATTCATAA CATGCTATGCTCTCACATCATTCATTGCTGGTTATGTGAGTGGAGGGATGTACTCTCGCCATGGAGGCAAAAATTGGATCAAGTCGATGATTCTCACCGC TTGTCTCTTTCCATTTATGTGCTTTGGGGTTGGGTTCATCCTGAACACAATTGCCATTTTCTATGGATCTTTAGCAGCCATTCCCTTTGGCACCATTGTG GTAGTTTTTGTAATATGGGCTTTTATTTCCTTCCCTCTGGCTCTTCTTGGCACTGTTGTTGGAAGAAATTGGAGTGGTGCTCCAAACAATCCATGTCGTG TGAAAACCATTCCCCGTCCAATTCCTGAGAAGAAATGGTACCTCACACCATCTGTGGTTTCGATGATGGGAGGACTTTTGCCCTTTGGCAGCATATTCAT TGAGATGTACTTTGTCTTCACATCCTTCTGGAATTACAAGGTCTACTATGTGTACGGGTTTATGCTGCTTGTTTTCCTGATTCTCATTATTGTAACAGTT TGCGTGACAATTGTGGGAACATATTTCTTGCTTAATGCTGAGAACTATCACTGGCAGTGGACTTCATTCTTCTCTGCTGCCTCAACAGCTGTTTATGTGT ACTTGTACTCAATATATTACTTCTATGTGAAGACTAAGATGTCGGGCTTCTTCCAGACAAGCTTCTATTTTGGATACACTTTGATGTTCTGTCTTGGATT GGGAATTCTCTGTGGAGCTGTTGGTTATTTAGGCTCAAATTTGTTTGTGAGGAGGATCTACAAGAACATAAAATGCGACTAG
AA sequence Show only first row Show all	>Potri.003G015300.2 pacid=42784869 polypeptide=Potri.003G015300.2.p locus=Potri.003G015300 ID=Potri.003G015300.2.v4.1 annot-version=v4.1 MSSATTARSLPLLAFISLLILSPALAFDADHRYGQEEPVKLWVNKVGPYNNPQETYNYYSLPFCHPSGDVATHKWGGLGEVLGGNELIDSQIDIKFGKNV DKGVTCQLELDEAKVKQFKDAIENNYWLEFFVDDLPLWGFVGELRPDKNGENGKHFLFTHKSITIQYNKDQIIHVNLTQENAKPLESGRILDLTYSVKWS LTNVSFARRFDVYLDYPFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYAREDDDLVESLERDVSEETGWKLVHGDVFRPPRSMVLLSAVVG TGAQLALLVLLVILMAIVGTLYVGRGAIVTTFITCYALTSFIAGYVSGGMYSRHGGKNWIKSMILTACLFPFMCFGVGFILNTIAIFYGSLAAIPFGTIV VVFVIWAFISFPLALLGTVVGRNWSGAPNNPCRVKTIPRPIPEKKWYLTPSVVSMMGGLLPFGSIFIEMYFVFTSFWNYKVYYVYGFMLLVFLILIIVTV CVTIVGTYFLLNAENYHWQWTSFFSAASTAVYVYLYSIYYFYVKTKMSGFFQTSFYFGYTLMFCLGLGILCGAVGYLGSNLFVRRIYKNIKCD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Potri.003G015300 [exp]	0	1
AT2G01070			Lung seven transmembrane recep...		Potri.001G209400 [exp]	1.41	0.9635
AT1G16860			Ubiquitin-specific protease fa...		Potri.008G006000 [exp]	2.00	0.9632
AT5G12370		SEC10	exocyst complex component sec1...		Potri.014G090100 [exp]	2.82	0.9491
AT1G16780		AtVHP2;2, AVPL1	Inorganic H pyrophosphatase fa...		Potri.010G254200 [exp]	3.00	0.9490
AT2G03480		QUL2	QUASIMODO2 LIKE 2 (.1.2)		Potri.010G159400 [exp]	4.00	0.9536
AT5G03300		ADK2	adenosine kinase 2 (.1)		Potri.010G224300 [exp]	5.47	0.9479	ADK2.2
AT5G11800		ATKEA6, KEA6	K+ efflux antiporter 6, ARABID...		Potri.006G230400 [exp]	5.83	0.9346	Pt-ATKEA4.3
AT4G02030			Vps51/Vps67 family (components...		Potri.002G196300 [exp]	6.48	0.9378
AT1G14830		DRP1C, ADL5, AD...	DYNAMIN RELATED PROTEIN 1C, AR...		Potri.010G105900 [exp]	6.70	0.9539	Pt-ADL5.1
AT3G59360		UTR6, ATUTR6	UDP-galactose transporter 6 (....		Potri.017G035800 [exp]	6.92	0.9452

Compare expression of checked genes

Potri.003G015300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.