Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-TH1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22940 711 / 0 THIE, TH-1, TH1 THIAMINEE, THIAMINE REQUIRING 1, thiamin biosynthesis protein, putative (.1) AT5G37850 53 / 2e-07 SOS4, ATSOS4 SALT OVERLY SENSITIVE 4, pfkB-like carbohydrate kinase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G129000 [exp] 50 / 3e-06 AT5G37850 534 / 0.0 SALT OVERLY SENSITIVE 4, pfkB-like carbohydrate kinase family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001365 [exp] 746 / 0 AT1G22940 720 / 0.0 THIAMINEE, THIAMINE REQUIRING 1, thiamin biosynthesis protein, putative (.1) Lus10015466 [exp] 746 / 0 AT1G22940 734 / 0.0 THIAMINEE, THIAMINE REQUIRING 1, thiamin biosynthesis protein, putative (.1) Lus10028527 [exp] 55 / 6e-08 AT5G37850 464 / 8e-166 SALT OVERLY SENSITIVE 4, pfkB-like carbohydrate kinase family protein (.1.2.3) Lus10009119 [exp] 54 / 2e-07 AT5G37850 531 / 0.0 SALT OVERLY SENSITIVE 4, pfkB-like carbohydrate kinase family protein (.1.2.3) Lus10010977 [exp] 51 / 8e-07 AT5G37850 471 / 2e-169 SALT OVERLY SENSITIVE 4, pfkB-like carbohydrate kinase family protein (.1.2.3) Lus10000451 [exp] 49 / 3e-06 AT5G37850 473 / 3e-170 SALT OVERLY SENSITIVE 4, pfkB-like carbohydrate kinase family protein (.1.2.3) Lus10014666 [exp] 43 / 0.0008 AT1G03160 1027 / 0.0 FZO-like (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [poplar] [flax] Ribokinase PF00294 [poplar] [flax] PfkB pfkB family carbohydrate kinase CL0036 [poplar] [flax] TIM_barrel PF02581 [poplar] [flax] TMP-TENI Thiamine monophosphate synthase
Representative CDS sequence Show only first row Show all	>Potri.003G015700.1 pacid=42785995 polypeptide=Potri.003G015700.1.p locus=Potri.003G015700 ID=Potri.003G015700.1.v4.1 annot-version=v4.1 ATGGCCTACGGTGGAGTCATCTTCTCCAATTCCTTCTCCTTCTACCAAAAACGCATAGTTATGAGCTCAAGAATGCAAGAGAAAAACGGCGGTGCTTCAG TCCCGCACGTCTTGAGTGTAGCCGGCTCTGATTCCGGTGCCGGCGCCGGAATCCAAGCCGACCTCAAGGCTTGTTCCGCACGCGGAGTTTATTGTTCTAC AGTGATAACTTCCGTTACTGCACAAAACACCGTTGGAGTTCAGGCAGTACACGCTGTGCCGGAGGATTTTGTTGCCCAGCAGTTGAAGTCAGTGCTTTCA GATATGCAAGTTGATGTCGTTAAAACAGGGATGCTGCCTTCTGTTGGGGTAGTTAAGGTTCTTCTTCAGAGTCTCACTGAGTTTTCGGTTCGAGCTTTGG TTGTTGATCCTGTCATGGTTTCTACCAGTGGAGACGTGCTTGCTGGCCCTTCCATTCTTTCCACTTTTCGAGAGGAGCTCCTTCCCATGGCCAACATAGT AACCCCAAATATAAAAGAGGCATCTGCTCTACTTGGTGGTATACGCCTTGAAACAGTTGCTGACATGCGCAACGCAGCTGAGCTGTTGCATGCACTGGGT CCACGAAATGTGCTTGTCAAAGGTGGTGATCTCCCTGATTCTTTGGATGCTGTTGATATCTTCTTTAATGGTGAACACTTCTATGAGCTGCGCTCATCTC GCATAAAAACTCGCAATACTCATGGTACTGGCTGCACTTTGGCTTCATGTATAGCAGCTGAGCTGGCAAAAGGTTCTCCAATGCTCACAGCTGTTAGGGT GGCTAAGCGCTATGTTGAGACAGCCTTGGAATATAGCAAAGACATTTTGATTGGAAATGGGATTCAAGGCCCCTTTGACCACCTACTAAGGCTTAAGAGT GGTTCTCACAGCTTCCATAGAAAAGATGCATTCAATCCAAGTGACTTGTTTCTGTATGCAGTTACAGATTCTGGGATGAATAAAAAGTGGGGACGGTCCA CGGTAGATGCTGTTGCAGCAGCCATACAAGGAGGGGCTACCATTGTTCAATTGAGGGACAAGGATGCTGGAACAAAGGATTTTTTGGAAACAGCAAAATC GTGTCTTGCAGTCTGTCGTTCCCATGGAGTTCCGCTATTGATAAATGACTGTGTTGATGTAGCCCTTGCAAGTGATGCTGATGGGGTACATGTCGGCCAG TCTGACATGCCTGCTACCGTGGCCCGCACTCTTCTGGGTCCAGAGAAAATAATCGGTGTATCATGCAAGACAATAGAGCAAGCTCAGCAAGCATGGATTG GCGGTGCGGACTACATTGGTTGTGGTGGAGTATATTCAACCAATACCAAGGCAAACAATCCCACTATCGGTTTGGATGGATTAAAAACTGTTTGTTCGGC TTCTAAGCTACCTGTGGTTGCAATTGGTGGGATTAATGATTCGAATGCAGGCACTGTGATGGAGATGGGGGTGCCAAATCTGAAAGGTGTCGCCGTTGTT TCAGCTCTATTCGATAGGGAAAATGTTTTGGCAGAGACCAAGAAGTTGCATGCGTTATTAATGGAGGCATCATCATCATCATCAAAGATACAATAA
AA sequence Show only first row Show all	>Potri.003G015700.1 pacid=42785995 polypeptide=Potri.003G015700.1.p locus=Potri.003G015700 ID=Potri.003G015700.1.v4.1 annot-version=v4.1 MAYGGVIFSNSFSFYQKRIVMSSRMQEKNGGASVPHVLSVAGSDSGAGAGIQADLKACSARGVYCSTVITSVTAQNTVGVQAVHAVPEDFVAQQLKSVLS DMQVDVVKTGMLPSVGVVKVLLQSLTEFSVRALVVDPVMVSTSGDVLAGPSILSTFREELLPMANIVTPNIKEASALLGGIRLETVADMRNAAELLHALG PRNVLVKGGDLPDSLDAVDIFFNGEHFYELRSSRIKTRNTHGTGCTLASCIAAELAKGSPMLTAVRVAKRYVETALEYSKDILIGNGIQGPFDHLLRLKS GSHSFHRKDAFNPSDLFLYAVTDSGMNKKWGRSTVDAVAAAIQGGATIVQLRDKDAGTKDFLETAKSCLAVCRSHGVPLLINDCVDVALASDADGVHVGQ SDMPATVARTLLGPEKIIGVSCKTIEQAQQAWIGGADYIGCGGVYSTNTKANNPTIGLDGLKTVCSASKLPVVAIGGINDSNAGTVMEMGVPNLKGVAVV SALFDRENVLAETKKLHALLMEASSSSSKIQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22940		THIE, TH-1, TH1	THIAMINEE, THIAMINE REQUIRING ...		Potri.003G015700 [exp]	0	1	Pt-TH1.1
AT5G38600			Proline-rich spliceosome-assoc...		Potri.004G104400 [exp]	2.23	0.8327
AT3G15420			Transcription factor TFIIIC, t...		Potri.011G121800 [exp]	5.29	0.8005
AT1G10600		AMSH2	associated molecule with the S...		Potri.010G041200 [exp]	5.29	0.8284
AT5G64816			unknown protein		Potri.005G156400 [exp]	5.65	0.8403
AT1G55140			Ribonuclease III family protei...		Potri.003G038400 [exp]	5.65	0.8265
AT5G10620			methyltransferases (.1)		Potri.006G278500 [exp]	5.83	0.8552
AT3G18140			Transducin/WD40 repeat-like su...		Potri.016G052800 [exp]	6.70	0.8414
AT3G13350	ARID		HMG (high mobility group) box ...		Potri.011G168800 [exp]	9.48	0.8100
AT4G02210			unknown protein		Potri.005G252500 [exp]	15.49	0.8314
AT5G64816			unknown protein		Potri.002G105400 [exp]	16.43	0.8109

Compare expression of checked genes

Potri.003G015700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.