Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10930 1329 / 0 ATSGS1, RECQL4A ,ATRECQ4A DNA helicase (RECQl4A) (.1) AT1G60930 1212 / 0 RECQL4B ,ATRECQ4B RECQ helicase L4B (.1) AT1G31360 394 / 2e-122 MED34, ATRECQ2, RECQL2 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) AT3G05740 384 / 7e-120 RECQI1 RECQ helicase l1 (.1) AT4G35740 318 / 3e-94 ATRECQ3, RECQL3 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) AT1G27880 207 / 7e-55 DEAD/DEAH box RNA helicase family protein (.1) AT5G27680 143 / 2e-34 RECQSIM RECQ helicase SIM (.1) AT2G33730 76 / 1e-13 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G16630 68 / 3e-11 DEA(D/H)-box RNA helicase family protein (.1) AT3G22310 62 / 2e-09 ATRH9, PMH1 RNA HELICASE 9, putative mitochondrial RNA helicase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G019800 [exp] 390 / 4e-122 AT3G05740 828 / 0.0 RECQ helicase l1 (.1) Potri.003G104300 [exp] 387 / 7e-120 AT1G31360 986 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Potri.005G107400 [exp] 303 / 1e-88 AT4G35740 850 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Potri.013G161200 [exp] 293 / 7e-84 AT1G31360 310 / 2e-93 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Potri.010G056500 [exp] 189 / 5e-49 AT1G27880 935 / 0.0 DEAD/DEAH box RNA helicase family protein (.1) Potri.005G026400 [exp] 128 / 7e-30 AT5G27680 875 / 0.0 RECQ helicase SIM (.1) Potri.012G045800 [exp] 73 / 1e-12 AT2G33730 994 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G037200 [exp] 71 / 3e-12 AT2G33730 1058 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G152400 [exp] 71 / 7e-12 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015467 [exp] 1457 / 0 AT1G10930 1288 / 0.0 DNA helicase (RECQl4A) (.1) Lus10042451 [exp] 371 / 1e-114 AT3G05740 814 / 0.0 RECQ helicase l1 (.1) Lus10026219 [exp] 370 / 3e-114 AT3G05740 816 / 0.0 RECQ helicase l1 (.1) Lus10033289 [exp] 364 / 2e-110 AT1G31360 949 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10034749 [exp] 328 / 4e-98 AT1G31360 853 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10041840 [exp] 288 / 8e-83 AT4G35740 879 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Lus10034434 [exp] 277 / 2e-78 AT1G31360 280 / 2e-82 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10028387 [exp] 219 / 5e-60 AT4G35740 778 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Lus10004503 [exp] 134 / 1e-31 AT5G27680 912 / 0.0 RECQ helicase SIM (.1) Lus10019129 [exp] 114 / 8e-28 AT5G27680 109 / 9e-27 RECQ helicase SIM (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0426 [poplar] [flax] HRDC-like PF00570 [poplar] [flax] HRDC HRDC domain CL0123 [poplar] [flax] HTH PF09382 [poplar] [flax] RQC RQC domain CL0123 [poplar] [flax] PF16124 [poplar] [flax] RecQ_Zn_bind RecQ zinc-binding
Representative CDS sequence Show only first row Show all	>Potri.003G015800.3 pacid=42784854 polypeptide=Potri.003G015800.3.p locus=Potri.003G015800 ID=Potri.003G015800.3.v4.1 annot-version=v4.1 ATGGCGATCGAAAAACATGTGAAGAAAAAAGTAAATAATTTAAGCGAAGGTCGGAAATGTGAAGATGAGAAGCAACCTAAAGTGAATTGGTTGCAACATG CCAATGCACTTGATAATATTTCCTCTAGAAGGAAATTTTTGAGTGCGAATTTCCTTTACTCGCTTGAATCGCAAAAACCAATGTCCATGAGGTTAAGCTT CTGTGATGTCCAGAATCCTCAAAGACTGCAGAGTTCACAAGTTGAAAAGGTAAAAATGTGCATTGCTTGGCATGCTCTGTCCACTCTTCAGATTTCTTCC AGGAACTACATTAGACCTGGTCAAACTGGTCCAGTAAAGAATGTCAGTGAAGACTTGTCGGGCAATGTAGGGCAAAGACCTACCTTCCAAAGCTCAAGTA ATATTAGCAAATATTCTGAAGGTGTGTATGCACAGAAAAACTTGAGTGGAAAGAACAGTGAAGCTGCAAAGCATATGGGCAATGTTATCCCAGCAGACAA TGCTAGCCATGTGCAATCTGGAAACAATCAAGGGTGGCCAAGTGATATTAAAGCATCATCAGGGGTCAACACCAACCAGTCTAATGTTTTAGCTGGTTCG TTCGTCAATCACACTGTGCAAACTTGTCAAACAAAAGAGTTTGTGGAAACTTCAGCTGATTACATTGATGATGATGACCTGATCGAGAGTATAGATGTGG ACCAAATTGTTATGGAGCACTACCAAGCTACTTGCACACCACAACCAGCAATTTCTAAGTTTCCGCCCATAACTCCAACTGCAGATCAAAATAGTTTTAT AAGGCCAGAGGAGATTTCTGTGCCACCTGAGTTGTGTTCAAACTGCAGTCATGGATTCAAGCTAGGACTTTGCCCAGAGGCTGCCAAACATTTACAAGAA ATGAAGGATATGCTGATTGCAGTATCAAATGATCTGCTTGACAATGCTGCTGAACTGAGTCAAGCGCAGATAGATAAGCTTCGCCAAGATAGGTTACAGC TCAATAAGCAAATTCAGCAACTTGAAAAATATCTTCGTGATGAGGAAAGACAGAAGTCACACTTTTCTGCATCCACATTGGTTCGAAATTTGCAGTATGA AACACCTCAATCTGCTGCATGCAAAATAGATCCCATGAGATTTGATGCCCAGGTTCATCTACGAAATGACCTGAATGAATATGAAAAGTGGAATGCACCC TCAGTTTCATTCTCTTCCATTGATAGCTTTGGTGTTTCTTCTGTTCCTTTAGAGAGAGAACCTTACATTCCAAGCTTTGTTGAAGTTAATTATATCGAAG GCTCAAATGATCCAAAGTGGAGCAGCACAAATTTCCCATGGACAAAAAAGCTGGAGGCCAATAACAAAAAAGTGTTTGGAAACCACTCGTTTCGCCCCAA TCAAAGAGAGGTCATCAATGCTACAATGAGTGGGTATGATGTCTTTGTTTTAATGCCAACTGGAGGTGGAAAAAGTCTGACATATCAGCTTCCTGCTCTA GTTTGTCCTGGAATAACCTTAGTAATTTCTCCACTCGTGTCGCTGATCCAAGATCAAATAATGCACCTTTTGCAGGCAAATATTCCTGCTGCTTACCTGA GTGCCAACATGGAGTGGACTGAACAACAGGAGATCCTAAGGGAACTTTGTTCTGATTATTGTAAATACAGGTTGTTATATGTCACGCCAGAGAAAGTTGC TAAAAGTGATGTTCTTTTGCGGAACTTGGAGAGCTTAAATGGTCGTGGATTGCTTGCTAGGATTGTTATTGATGAAGCACACTGTGTGAGTCAGTGGGGG CATGATTTTAGACCGGATTACAAGGAACTTGGTATCTTGAAGAAGAAATTTGAGAAAACTCCAGTGTTAGCTTTGACTGCTACTGCAACAGCCAGTGTAA AAGAAGATGTTGTGCAAGCTCTTGGTCTTGTGGACTGCATTGTTTTCCGGCAAAGCTTTAATCGCCCCAACTTATGGTATTCTGTAATTCCCAAGACAAA AAAGTGCTTGGAAGACATCGACAAGTTCATCAAAGAAAATCATTTTGATGAATGTGGAATTATTTACTGTCTTTCAAGAATGGACTGCGAAAAAGTTGCT GAAAAACTGCAGGAATGTGGGCATAAAACAGCATTTTACCATGGTAATATGGATGCTGCACAACGTTCCTTTGTTCAGAAGCAGTGGAGCAAAGATGAAA TTAACATCATCTGTGCTACAGTGGCATTTGGAATGGGCATCAACAAACCAGATGTCCGCTTTGTGATTCATCATTCTCTTCCAAAATCGATTGAAGGTTA TCATCAGGAGTGTGGTCGTGCTGGCAGAGACGGTCAACGCTCATCCTGTGTGTTGTATTACAGTTACAGCGACTATATACGAGTCAAGCACATGATTATA CAAGGACAAGCAGAGCAAAGTCCCTGGACAGCTGGATGTGGTCGCAATAATATGAAAAGTTCAGATAGGATACTGGAAAAAAACACTGAAAATCTCCTGC GAATGGTCAGTTATTCTGAAAATGATGTCGATTGCAGACGTCTCTTACAACTTCTGCATTTTGGAGAAAAGTTTGATGCTGGAAACTGTGGGAATACATG TGATAATTGCTCTAAGATCAAAACTCTAGTGGAGAGGGACGTCACTGAGAGTGCAAAGCAATTGGTTGAGCTGGTCAAGTTAACTGGGCAGCATTTTTCA TCATCTCACATTTTAGAAGTCTACAGGGGTTCCTTAAGCCAATTTGTCAAGAGACACAGACATGAGAACTTGAGCCTTCATGGAGCTGGAAAACACCTAG CCAAGGGTGAAGCTTCCCGTATATTGCGTCATCTTGTTATTGAGGATTTTCTTGCAGAGGATGTTAAGAAAAGTGACTTTTACGGATCTGTATCGTCAGT GTTAAAGGTGAATGAATCCAAGGCACACAAACTATGCTCTGGCGGGCAAAGGATTGTTTTAAGATTCCCTTCCTCTGTAAAAGCTTCAAAACAGGGCAAA TCTGAGGCTACTCCAGCCAAAGGCTCACTCATGTCTGGGAAGTTAAGTCCTCCGCAAGCTGGTAGTCCTGCCCAACCTCAATCTGAAGTGGACTTGAACC TGTCGGCAAAACTATTTTCTGCTCTGCGAATGCTTCGAACTGCTCTTCTGAAAGAAGCTGGAGATGGTGTTATGGCGTACCACATATTTGGTAATGCCAC GCTGCAGCACATGAGCAAAAGAATTCCCAGAACGAAGGAAGAACTCCTGGAGATCAATGGCATCGGAAAGGCCAAGGTCAGTAAGTATGGAGATCGAGTG CTTGAAACCATTGAATCTACCATTAGGGAATACAATAAGGGAGACAGAAATAGTAGCGGTAGCAATGAAAGTAGTGATTCAATAAAGAGGAGAAGAGATG CAAGTAAGGCTCTGAATGGGAACATGGAAGAAGAAGATGAATTCACCAAAAGCACTGGTCGGTCAAAGAAAAGGACAGTGACGAGGCAGAACAAAGGTTC CGAGGTTCATAATTCTATGGAGCCAGTTAGCTGCAACCAGTTCCTAGACGATGACCTGGATTTCAAAGATTCCTATCATGATCTGGAAGCTGATGCTTAG
AA sequence Show only first row Show all	>Potri.003G015800.3 pacid=42784854 polypeptide=Potri.003G015800.3.p locus=Potri.003G015800 ID=Potri.003G015800.3.v4.1 annot-version=v4.1 MAIEKHVKKKVNNLSEGRKCEDEKQPKVNWLQHANALDNISSRRKFLSANFLYSLESQKPMSMRLSFCDVQNPQRLQSSQVEKVKMCIAWHALSTLQISS RNYIRPGQTGPVKNVSEDLSGNVGQRPTFQSSSNISKYSEGVYAQKNLSGKNSEAAKHMGNVIPADNASHVQSGNNQGWPSDIKASSGVNTNQSNVLAGS FVNHTVQTCQTKEFVETSADYIDDDDLIESIDVDQIVMEHYQATCTPQPAISKFPPITPTADQNSFIRPEEISVPPELCSNCSHGFKLGLCPEAAKHLQE MKDMLIAVSNDLLDNAAELSQAQIDKLRQDRLQLNKQIQQLEKYLRDEERQKSHFSASTLVRNLQYETPQSAACKIDPMRFDAQVHLRNDLNEYEKWNAP SVSFSSIDSFGVSSVPLEREPYIPSFVEVNYIEGSNDPKWSSTNFPWTKKLEANNKKVFGNHSFRPNQREVINATMSGYDVFVLMPTGGGKSLTYQLPAL VCPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWTEQQEILRELCSDYCKYRLLYVTPEKVAKSDVLLRNLESLNGRGLLARIVIDEAHCVSQWG HDFRPDYKELGILKKKFEKTPVLALTATATASVKEDVVQALGLVDCIVFRQSFNRPNLWYSVIPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVA EKLQECGHKTAFYHGNMDAAQRSFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMII QGQAEQSPWTAGCGRNNMKSSDRILEKNTENLLRMVSYSENDVDCRRLLQLLHFGEKFDAGNCGNTCDNCSKIKTLVERDVTESAKQLVELVKLTGQHFS SSHILEVYRGSLSQFVKRHRHENLSLHGAGKHLAKGEASRILRHLVIEDFLAEDVKKSDFYGSVSSVLKVNESKAHKLCSGGQRIVLRFPSSVKASKQGK SEATPAKGSLMSGKLSPPQAGSPAQPQSEVDLNLSAKLFSALRMLRTALLKEAGDGVMAYHIFGNATLQHMSKRIPRTKEELLEINGIGKAKVSKYGDRV LETIESTIREYNKGDRNSSGSNESSDSIKRRRDASKALNGNMEEEDEFTKSTGRSKKRTVTRQNKGSEVHNSMEPVSCNQFLDDDLDFKDSYHDLEADA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10930		ATSGS1, RECQL4A...	DNA helicase (RECQl4A) (.1)		Potri.003G015800 [exp]	0	1
AT4G31830			unknown protein		Potri.018G106300 [exp]	3.16	0.9241
AT5G36930			Disease resistance protein (TI...		Potri.011G009251 [exp]	10.39	0.9187
AT5G17680			disease resistance protein (TI...		Potri.013G097000 [exp]	15.49	0.9047
AT1G17960			Threonyl-tRNA synthetase (.1)		Potri.010G096550 [exp]	20.39	0.8765
AT2G39090		APC7, AtAPC7	anaphase-promoting complex 7, ...		Potri.008G215100 [exp]	20.78	0.8443
AT1G08390			unknown protein		Potri.002G256001 [exp]	20.83	0.8237
AT4G04980			unknown protein		Potri.011G047100 [exp]	21.95	0.8188
AT4G18840			Pentatricopeptide repeat (PPR-...		Potri.001G108500 [exp]	23.02	0.8579
AT1G25350		OVA9	ovule abortion 9, glutamine-tR...		Potri.010G122866 [exp]	24.37	0.8711
AT5G54010			UDP-Glycosyltransferase superf...		Potri.017G041900 [exp]	25.13	0.8663

Compare expression of checked genes

Potri.003G015800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.