Plant FIBer expression Database

Potri.003G016275 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G047001
[exp]
42 / 1e-05 AT1G43760 265 / 5e-82 DNAse I-like superfamily protein (.1)
Potri.012G063901
[exp]
41 / 2e-05 AT1G43760 266 / 1e-80 DNAse I-like superfamily protein (.1)
Potri.005G151275
[exp]
41 / 3e-05 AT1G43760 268 / 1e-81 DNAse I-like superfamily protein (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.003G016275.1 pacid=42785841 polypeptide=Potri.003G016275.1.p locus=Potri.003G016275 ID=Potri.003G016275.1.v4.1 annot-version=v4.1
ATGATTAATAGGCTTTTTCTCTCTGATGAGACTTGGTGCACTGATGATTCTAAACTACAGGAAGAGGCCATCCAATTTTATAAGAATCTGTTCTGCTCTG
AGGTAACAGTTACTACTCTTTTTATGGAGTCCGTTTCTTTGCTTAAATTATCTCCACAAGGAATCTCTAATTTAGAGAAACCAGTTTCTAATGAGGATGT
TTATGCAACATCTTTTAAATCTCCGGGGAAGGATGGCTTCCAAACTTTTTTCTTCAAAAAATACTGGAATGTGGTTAGGGATGACATCTAG
AA sequence
>Potri.003G016275.1 pacid=42785841 polypeptide=Potri.003G016275.1.p locus=Potri.003G016275 ID=Potri.003G016275.1.v4.1 annot-version=v4.1
MINRLFLSDETWCTDDSKLQEEAIQFYKNLFCSEVTVTTLFMESVSLLKLSPQGISNLEKPVSNEDVYATSFKSPGKDGFQTFFFKKYWNVVRDDI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.003G016275
[exp]
0 1
AT3G24600 Late embryogenesis abundant pr... Potri.006G160100
[exp]
4.47 0.7308
AT5G27550 P-loop containing nucleoside t... Potri.005G031850
[exp]
25.69 0.7225
AT3G19870 unknown protein Potri.008G085300
[exp]
30.39 0.6718
AT3G01720 unknown protein Potri.001G336400
[exp]
33.04 0.7094
AT2G16390 DMS1, CHR35, DR... DEFECTIVE IN RNA-DIRECTED DNA ... Potri.009G120700
[exp]
36.05 0.6761
AT3G24180 Beta-glucosidase, GBA2 type fa... Potri.003G178000
[exp]
52.15 0.6925
AT4G38600 UPL3, KAK UBIQUITIN-PROTEIN LIGASE 3, KA... Potri.004G174700
[exp]
57.05 0.6926
AT1G73460 Protein kinase superfamily pro... Potri.015G033400
[exp]
62.25 0.6631
AT2G20000 CDC27b, HBT HOBBIT, CDC27 family protein ... Potri.006G164000
[exp]
70.14 0.6820
AT2G40930 PDE323, ATUBP5,... PIGMENT DEFECTIVE EMBRYO 323, ... Potri.016G031900
[exp]
71.24 0.6664

Potri.003G016275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.