Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22930 994 / 0 T-complex protein 11 (.1.2) AT4G09150 397 / 1e-119 T-complex protein 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G217800 [exp] 1732 / 0 AT1G22930 1040 / 0.0 T-complex protein 11 (.1.2) Potri.013G105300 [exp] 1046 / 0 AT1G22930 893 / 0.0 T-complex protein 11 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015468 [exp] 1314 / 0 AT1G22930 1083 / 0.0 T-complex protein 11 (.1.2) Lus10001363 [exp] 1276 / 0 AT1G22930 1056 / 0.0 T-complex protein 11 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05794 [poplar] [flax] Tcp11 T-complex protein 11
Representative CDS sequence Show only first row Show all	>Potri.003G018500.2 pacid=42786323 polypeptide=Potri.003G018500.2.p locus=Potri.003G018500 ID=Potri.003G018500.2.v4.1 annot-version=v4.1 ATGGATATTGGAGCGGAGTCGTCATCACCGTCGTCGACGTCGCCGGAGACTGGGGTAGTGGGTGGTGGAGTTGTTATTGATTTTCCTGTGAGTGATAAGG TATCGTTCTCGTCTCCGAGGAGAATACCGAAGAACCTTCAAAAAAGACTATTGGAAGCGAAGACTCCTACAACTAGTAGTGTTGAAGAAATCGAAGCTAA ACTTCGACACGCTCATCTCCGTCGACAGCAATTCTATGAGAAGTTGTCAAGCAAGGCTAGACCAAAGCCAAGAAGCCCCTCACAATGTTCATCTCATGAA GAAGACCTTGCCCAACGCCTTGAAGCAAAGCTTCATGCCGCGGAGCAAAAAAGGTTAAGCATCCTGGAAAAAGCTCAGATGCGCCTGGCTAGGTTGGATG AGTTGCGGCAGGCGGCTAAAACTGGGGTGGAGATGCGTTTTGAGAGAGAAAGGGAGAGGCTTGGAACAAAAGTGGAGTTACGGGTTCAGCAGGCTGAAGC AAATAGAATGCTCATGCTCAAGGCATACAGACAAAGAAGGGCCACGCTTAAGGAGAGAACATCCCAATCATTGTCACGAAGAATGGCTCGGGAAAGTAAG TACAAGGAGCGTGTACGTGCTGCAATTAACCAAAAACGTGCAGCCGCTGAAAAGAAGCGTATGGGATTGCTGGAAGCTGAAAAGAGGAGGGCATGTGCTA GGGTGTTGCAAGTTCAGCGAGTAGCCAGGTCTGTCTCTCACCAACGTGAGATTGAGAGGAGGAGAATGAGGGACAAGCTGGAAGATCGACTGCAAAGGGC AAAGAGACAAAGAGCAGAATATTTGAGGCAGAGAGGACGGCAGCATAGCTCTGTTCGAGTGAACTGGAATAAGATGCACAAGCAGGCTGATCTCCTTTCT AGAAAATTAGCAAGGTGCTGGAGGCAGTTCCTGAGGTCAAGGAGGACTACCATAGACCTGGCAAAAGACTATGATGCCCTGAAAATCAATGAAAACTGTG TGAAGTTGATGCCATTTGAACCGCTTGCTCGTCTGATTGAATCAACAGGTACTCTTCAGACTGTGAAGGCTCTACTTGATCGTGTGGAGAGCCGCTTTAG AGTCTCCATGGCTGTTGCTACTATGGATCATCCCTCCAGCTTGGAAAACATTGATCACCTTCTCAAAAGAGTTGCCACCCCTAAGAAAAGGAGGACTACT CCTAGGTCCTCTATGAGGAGCAGAGATGTAAAACGAGTAGGTACCACCAGGGAGTCTGCCAGAAGTGCTGCTACATTGTCAAGGTATCCAGTGAGAATTG TTCTTTGTGCCTACATGATTTTAGGACATCCAGATGCTGTTTTCAGTGGTCAAGGGCAGCGTGAGATTGCTCTGGCCAAGTCTGCTGAAGATTTCATTCG AGAGTTTGAGTTGTTGATAAGGATTATACTGGATGGGCCCATGCACAGTTCTGATGAGGATTCTGAGTCCATGTCACCAAAACGTTGTACGTTCAGGTCT CAACTTGCAGCTTTTGATAAAGAATGGTGCTCCTACTTGAATTGCTTTGTGGTGTGGAAGGTTAAGGATGCTCAGTCATTGGAGGAGGACTTGGTGAGAG CTGCGTGCCAGCTTGAACTCTCTATGATCCAAAAATGCAAGCTCACCCCAGAAGGGAGTACTGATGCTCTTACTCATGATATGAAAGCCATTCAGAAACA GGTTACAGAAGATCAAAAACTATTAAGGGAAAAGGTTCAACACCTGAGTGGAGATGCTGGTATTGAGCGTATGGAAATTGCACTATCTGAAACACGATCT AGGTACTTTCAAGCTAAGGAAAATGGAAGTCCAGTAGGGTCTCCAATCATACACTTTCTATCTCCTAGCATGCCCCCATCTTCTCCTTCTGCTACTGGCT CGGCTAATAGAAATAATGTGAGTGATGGTATTGAGAGGCCAAGCCGTGTAGTTCGCTCCTTATTCAGAGAAGATACCTCCTCAGCAAAAGAACCTGCTTC CTCTGCAACCAGCAGCAGCCACTTCGATGGCCAGTCAGGTTCTGCTGTTGGGAAATCAATAACAGAGAATGAATTGATCATAAATGAATTTCTCCATGAG CAACGCCATGGTTTTATGGATAGGTTCAATCTTGCTGACAAAGATGAAAACAGCCTCAAGGAAAAGGTGAGAGAGACAATGGAGGCAGCTTTCTGGGATA GTGTTCTGGAATCCATGAAACAGGATGAGCCCAAGTACGAGTGGGTAGTTCAGCTTGTGGGGGAGGTGAGGGATGAAATTCAGGAGCTGGCTCCTGAGAG CTGGAAACAAGAGATTGTTGAAAGTATCGATCCAGATCTTCTTGCTCAGGTTCTAAGGTCAGGTAACCTGGACGTTGGTTACTGTGGGAAGATTCTAGAG TTCGCATTAGTTACTTTGCAGAAACTCTCCTCTCCAGCCCATGAGGATGAAATGAAGGCCCTGCATCAGAAAATGTTAAAAGAGTTGGCTCAGACTTGTC AAACCGAAGATGAATCGAAGTATTCACATATTGCCACAATGATCAAAGGTCTGCGCTTTGTGCTGCAGCAGATACAGGCTCTTAAGCAAGAGATTAGTAA AGCACGCATAAGAATGATGGAGCCTTTGTTAACAGGTCCTGCTGCATTGGATTATCTTAGAAAAGCTTTTGCCAACCATTATGGGTCTGATTTGGATGCC TGTAACTCTCTACCACTGACAATGCAGTGGCTTTCATCTGTAAAGAGTAGTGAAGATCAAGAGTGGGAAGAACACAAGAATTCTCTCTTGGCTTTGAAGA GCCATGACAGTTCATCACGGGTTTTTGTACCTCTCACCTCCCTTAGAACTGGTGGAAGCTTTCTGGTCAAAACAAATGAAAGTGTAATTGCTTCTTCTTC TGTTGCTTCTGAGACAGATAACCAACAACCAGAACCGGAATGCACTGGTGAAAGAGTTGATTTGTTGGTGAGGCTAGGATTGTTGAAGTTAGTGAGTGGA GTTTCTGGTCTAACAAAAGAAGCTCTGCCTGAAACTTTTATGCTAAACCTGTTACGGTTGAGGGCTGTGCAGGCTCAAATTCAGAAAATCATTGTAATTT CTACCAGCATTCTGGTTTGCCGGCAAATGCTCCTGATGGAGCAAGCAGTAACCAGCAGTGCAGACATGGAAAACATTCTGTTAGAGTGCAGCAATAAACT GTCGGAAGTCCTGGACCGTGTTGATGACGCTGGTATTGAAGAAATAGTTGAAGTAGTTAGTGGGTTGTTGCAAGGCGATGACAAGGTAGTTGATGAGGAG AAGCTTAAGCCAAGAAAGATAGTCATGGCTAGGATGTTAGCAAAGAGCTTGCAGGCTGGGGATCCGATTTTTGAAAAAGTTTCCCGTGCTGTCTATTTGG CTCTAAGAGGAATTGTGCTTGGGGGCAGTGGACCCTGGGGAAGAAAATTAGTAGAAATGGCACTCAGGCAGATTGGAGCTGTCATGCTGACAAAAACAGT GGTGGCAGCTGCTGAAGTATTAGTGGTGGCAGCCACCGTATCCACTGGCATTCACAGGCCATGGTATGTAAATCTGACCGATAACCTGTGA
AA sequence Show only first row Show all	>Potri.003G018500.2 pacid=42786323 polypeptide=Potri.003G018500.2.p locus=Potri.003G018500 ID=Potri.003G018500.2.v4.1 annot-version=v4.1 MDIGAESSSPSSTSPETGVVGGGVVIDFPVSDKVSFSSPRRIPKNLQKRLLEAKTPTTSSVEEIEAKLRHAHLRRQQFYEKLSSKARPKPRSPSQCSSHE EDLAQRLEAKLHAAEQKRLSILEKAQMRLARLDELRQAAKTGVEMRFERERERLGTKVELRVQQAEANRMLMLKAYRQRRATLKERTSQSLSRRMARESK YKERVRAAINQKRAAAEKKRMGLLEAEKRRACARVLQVQRVARSVSHQREIERRRMRDKLEDRLQRAKRQRAEYLRQRGRQHSSVRVNWNKMHKQADLLS RKLARCWRQFLRSRRTTIDLAKDYDALKINENCVKLMPFEPLARLIESTGTLQTVKALLDRVESRFRVSMAVATMDHPSSLENIDHLLKRVATPKKRRTT PRSSMRSRDVKRVGTTRESARSAATLSRYPVRIVLCAYMILGHPDAVFSGQGQREIALAKSAEDFIREFELLIRIILDGPMHSSDEDSESMSPKRCTFRS QLAAFDKEWCSYLNCFVVWKVKDAQSLEEDLVRAACQLELSMIQKCKLTPEGSTDALTHDMKAIQKQVTEDQKLLREKVQHLSGDAGIERMEIALSETRS RYFQAKENGSPVGSPIIHFLSPSMPPSSPSATGSANRNNVSDGIERPSRVVRSLFREDTSSAKEPASSATSSSHFDGQSGSAVGKSITENELIINEFLHE QRHGFMDRFNLADKDENSLKEKVRETMEAAFWDSVLESMKQDEPKYEWVVQLVGEVRDEIQELAPESWKQEIVESIDPDLLAQVLRSGNLDVGYCGKILE FALVTLQKLSSPAHEDEMKALHQKMLKELAQTCQTEDESKYSHIATMIKGLRFVLQQIQALKQEISKARIRMMEPLLTGPAALDYLRKAFANHYGSDLDA CNSLPLTMQWLSSVKSSEDQEWEEHKNSLLALKSHDSSSRVFVPLTSLRTGGSFLVKTNESVIASSSVASETDNQQPEPECTGERVDLLVRLGLLKLVSG VSGLTKEALPETFMLNLLRLRAVQAQIQKIIVISTSILVCRQMLLMEQAVTSSADMENILLECSNKLSEVLDRVDDAGIEEIVEVVSGLLQGDDKVVDEE KLKPRKIVMARMLAKSLQAGDPIFEKVSRAVYLALRGIVLGGSGPWGRKLVEMALRQIGAVMLTKTVVAAAEVLVVAATVSTGIHRPWYVNLTDNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22930			T-complex protein 11 (.1.2)		Potri.003G018500 [exp]	0	1
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Potri.013G041000 [exp]	3.00	0.8142
AT4G02680		EOL1	ETO1-like 1 (.1)		Potri.002G048300 [exp]	7.07	0.7551
AT2G33360			Protein of unknown function (D...		Potri.008G171400 [exp]	7.07	0.7232
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Potri.004G203400 [exp]	7.48	0.7939
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Potri.010G223200 [exp]	7.74	0.7890
AT2G23360			Plant protein of unknown funct...		Potri.007G046100 [exp]	10.19	0.7977
AT2G41700		AtABCA1, ABCA1	Arabidopsis thaliana ATP-bindi...		Potri.006G049300 [exp]	12.96	0.7468
AT5G05830			RING/FYVE/PHD zinc finger supe...		Potri.004G059200 [exp]	15.58	0.7200
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Potri.008G039000 [exp]	18.49	0.7390
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Potri.009G120800 [exp]	19.59	0.7244

Compare expression of checked genes

Potri.003G018500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.