Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-AKT2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22200 1045 / 0 AKT3, AKT2/3 potassium transport 2/3 (.1) AT2G26650 600 / 0 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT2G25600 536 / 3e-178 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT4G32500 534 / 1e-177 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT5G46240 483 / 2e-160 KAT1 potassium channel in Arabidopsis thaliana 1 (.1) AT4G18290 470 / 4e-155 KAT2 potassium channel in Arabidopsis thaliana 2 (.1) AT4G32650 403 / 1e-130 AtLKT1, KAT3, ATKC1 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) AT5G37500 357 / 3e-110 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT3G02850 351 / 3e-108 SKOR STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) AT5G57940 65 / 1e-10 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G071400 [exp] 579 / 0 AT2G26650 1192 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.018G031600 [exp] 572 / 0 AT2G25600 1078 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.006G249900 [exp] 544 / 0 AT2G25600 1065 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.004G132200 [exp] 535 / 4e-179 AT5G46240 913 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Potri.006G245000 [exp] 421 / 4e-137 AT4G32650 752 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.018G035500 [exp] 414 / 3e-134 AT4G32650 777 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.012G124944 [exp] 409 / 2e-132 AT4G32650 734 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.017G135400 [exp] 358 / 2e-110 AT3G02850 1269 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.004G083300 [exp] 351 / 5e-108 AT3G02850 1268 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019944 [exp] 1127 / 0 AT4G22200 1111 / 0.0 potassium transport 2/3 (.1) Lus10015474 [exp] 1116 / 0 AT4G22200 1093 / 0.0 potassium transport 2/3 (.1) Lus10019442 [exp] 572 / 0 AT2G26650 1252 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10043298 [exp] 569 / 0 AT2G26650 1250 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10033052 [exp] 562 / 0 AT2G26650 1211 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10002529 [exp] 560 / 0 AT2G25600 1030 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10013115 [exp] 535 / 3e-178 AT2G25600 1036 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10008082 [exp] 532 / 2e-177 AT2G25600 994 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10028128 [exp] 500 / 7e-166 AT5G46240 827 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Lus10042831 [exp] 499 / 1e-165 AT5G46240 825 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF00027 [poplar] [flax] cNMP_binding Cyclic nucleotide-binding domain CL0030 [poplar] [flax] Ion_channel PF07885 [poplar] [flax] Ion_trans_2 Ion channel CL0030 [poplar] [flax] PF11834 [poplar] [flax] KHA KHA, dimerisation domain of potassium ion channel CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.003G018800.1 pacid=42784543 polypeptide=Potri.003G018800.1.p locus=Potri.003G018800 ID=Potri.003G018800.1.v4.1 annot-version=v4.1 ATGGCGGAAACGAAGTTCACTCCATACAATCTTCACCACACCTCTAGCATGAGGAGGAGTTGGAAGCAAGAACATGATTCTGAAACCCCACACCAAGAAG AAGAAGAAGATGACTCTCCTCTATCTCTCTCAAGCTTGTCAAAGATTATTCTTCCTCCTCTGGGTGTTTCCAGCTTTAACCAGAATCCTATAGAGTCCAA GGGGTGGATAATCTCTCCTGTGGACTCAAGATACAGGTGCTGGGGGACAATTATGGCGGTTTTGGTAGCTTATTCTCTGTGGGTATACCCTTTTGAAGTT GCATTTCTGAACTCCTCGCCGTATAGAGCACTATACATCGCCGACAACGTTGTCGACCTCTTTTTTTCTGTGGACATCGTTCTAACATTCTTCGTTGCTT ACATCGACTCAAGAACACAACTACTTGTTCGTGACAGAAGAAAGATTGCTCGGAGGTACCTTTCAACATGGTTTTTGATGGATGTGGCATCCACTGTCCC ATTTGAACTACTGGCCTACTTGTTCACAGGCAATGAAAAAGTAGGGCTCTCTTATTCCCTCTTGGGCCTGCTCAGATTTTGGAGACTTCGAAGAGTTAAG CAACTCTTCACTAGACTTGAGAAGGATATCAGATTTAGCTATTTTTGGGTCCGGTGTGCTAGGCTACTATGTGTGACACTATTTCTTGTGCACTGTGCTG GTTGCCTCTACTACTTGCTAGCTGACAGATACCCGCACAAAGGGAAGACATGGATAGGTGCTGTGATACCAAATTTCAGAGAGACAAGCCTTCGGATCAG ATATATTTCAGCTATGTATTGGTCAATCACCACCATGACTACAGTTGGTTATGGTGATCTCCATGCTCAAAACTCCATGGAAATGATTTTCATCATCTTC TACATGCTCTTCAACCTTGGTCTAACTGCTTATTTGATCGGTAACATGACAAATCTAGTCGTTGAAGGAACTCGACGTACCATGGAATTTAGGAACAGCA TTGAAGCAGCATCAAATTTTGTGAGCAGAAACCGTTTGCCTCCAAGATTAAAGGATCAGATATTGGCATATATGTGCTTGAGATTCAAGGCTGAGAACTT GAACCAGCATCAATTGATTGAACAGCTACCAAAATCCATCTGCAAAAGCATTTGCCAGCATTTGTTTCTGCCTACAGTGGAGAAGGTCTATCTTTTCAAG GGTATCTCAAGGGAAACACTCTTGCACCTGGTTGCGAAGATCAAAGCTGAGTACATCCCACCAAGAGAAGATGTTGTCATGCAAAATGAAGCTCCAGATG ATGTTTACATAATTGTATCAGGAGAGGTTGAGATCATCGAATCCCATCTAGAGAAGGAACGAGTTGTTGGGACTTTGCGCTCTGGGGACATGTTTGGAGA AGTGGGTGCGCTTTGTTGCACACCTCAGAGCCATATATTTCGAACGAGAACACTCTCACAGCTCCTGAGGATCAAAACCACAGCTCTTATAGAAGCAAAG CAGACCAATCAAGACGATTACATAGCTATTATAAAGAACTTTCTTCAGCATTGCAAAAGGCTTAAGGATTTGAAGATTGGAGATTTAACTGTTGAGAATG GAGAAGAAGAGGATGATCCAAACATGGCTTTCAACTTGCTACCTACAGCAAGCACAGGCAATGCTGCTTTTCTTGAAGAACTTCTCAAGGCAAAATTGGA TCCTGATATTGCAGACTCCAAAGGAAGAACCCCATTGCACATAGCAGCGTCAAAAGGACATGAAGAGTGTGTGGTGGTGCTCCTTAGGCATGGATGCGAT ATACACCTGAGAGATATTAATGGTAATACTGCTTTGTGGGAAGCCATATCATCGAAGCATCATTCCATATTTAGGATTCTCTTTCACTATGCTTCCATTT CTGACCCTAACGCCGCGGGTGATCTCTTATGCACCGCTGCAAAACAAAACGATCTGATGGTGATGAAGGAACTACTGAAACAAGGATTAAATGCCGATTC AAAGGATCGCCATGGAAAAACAGCACTCCAGGTAGCCATGGCAGAGAATCATGGGGACATGGTAAACTTGCTAGTAATGAACGGCGCGGAAGTTGCTGAA GCAAACACTCATGACTTCTCTTCCACGAGCCTCAATGAAATGCTTCAAAAGAGAGAGATCGGACACCGAATTACGGTGCCTGATGTCTTGACTGCTAATG AAGTGCTTTTAAAGAGGTGTGAAGGGGAACAAGAATGCACCTCATGCACTGGTAAATCCAAAGGATCATCATCAGATTGTATTAGGGTGAGCATATACAG AGGACATCCCATGGTTAGGAGACAAACTTGCTGTGTGGAAGCTGGGAGATTGATCAAGTTGCCAAATTCCCTAGAGGAGCTAAAGAGCATTGCAGGTGAA AAGTTTGGATTCGATGCAAGAAATGCCATGGTGACAGATGAAGAAGGTTCAGAGGTTGACTCCATTGAAGTGATTAGAGACAAGGACAAGCTTTACATGG TTGAAGATCCAACTTGCTTAATCCATTTGGATGAAACTAGCTAG
AA sequence Show only first row Show all	>Potri.003G018800.1 pacid=42784543 polypeptide=Potri.003G018800.1.p locus=Potri.003G018800 ID=Potri.003G018800.1.v4.1 annot-version=v4.1 MAETKFTPYNLHHTSSMRRSWKQEHDSETPHQEEEEDDSPLSLSSLSKIILPPLGVSSFNQNPIESKGWIISPVDSRYRCWGTIMAVLVAYSLWVYPFEV AFLNSSPYRALYIADNVVDLFFSVDIVLTFFVAYIDSRTQLLVRDRRKIARRYLSTWFLMDVASTVPFELLAYLFTGNEKVGLSYSLLGLLRFWRLRRVK QLFTRLEKDIRFSYFWVRCARLLCVTLFLVHCAGCLYYLLADRYPHKGKTWIGAVIPNFRETSLRIRYISAMYWSITTMTTVGYGDLHAQNSMEMIFIIF YMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVSRNRLPPRLKDQILAYMCLRFKAENLNQHQLIEQLPKSICKSICQHLFLPTVEKVYLFK GISRETLLHLVAKIKAEYIPPREDVVMQNEAPDDVYIIVSGEVEIIESHLEKERVVGTLRSGDMFGEVGALCCTPQSHIFRTRTLSQLLRIKTTALIEAK QTNQDDYIAIIKNFLQHCKRLKDLKIGDLTVENGEEEDDPNMAFNLLPTASTGNAAFLEELLKAKLDPDIADSKGRTPLHIAASKGHEECVVVLLRHGCD IHLRDINGNTALWEAISSKHHSIFRILFHYASISDPNAAGDLLCTAAKQNDLMVMKELLKQGLNADSKDRHGKTALQVAMAENHGDMVNLLVMNGAEVAE ANTHDFSSTSLNEMLQKREIGHRITVPDVLTANEVLLKRCEGEQECTSCTGKSKGSSSDCIRVSIYRGHPMVRRQTCCVEAGRLIKLPNSLEELKSIAGE KFGFDARNAMVTDEEGSEVDSIEVIRDKDKLYMVEDPTCLIHLDETS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22200		AKT3, AKT2/3	potassium transport 2/3 (.1)		Potri.003G018800 [exp]	0	1	Pt-AKT2.1
AT1G51340			MATE efflux family protein (.1...		Potri.009G053700 [exp]	3.60	0.7869
AT1G11700			Protein of unknown function, D...		Potri.004G015700 [exp]	3.74	0.7620
AT1G13245		RTFL17, DVL4	DEVIL 4, ROTUNDIFOLIA like 17 ...		Potri.008G116700 [exp]	6.70	0.7592
AT1G68740		PHO1;H1	EXS (ERD1/XPR1/SYG1) family pr...		Potri.010G132300 [exp]	6.70	0.7148
AT1G09530	bHLH	PIF3, POC1, PAP...	PHOTOCURRENT 1, PHYTOCHROME-AS...		Potri.013G001300 [exp]	10.58	0.7266
AT5G01260			Carbohydrate-binding-like fold...		Potri.016G114500 [exp]	11.66	0.6893
AT3G17760		GAD5	glutamate decarboxylase 5 (.1....		Potri.012G039000 [exp]	18.00	0.6337
AT2G42760			unknown protein		Potri.006G129800 [exp]	21.35	0.7150
AT5G67350			unknown protein		Potri.005G145100 [exp]	24.49	0.6269
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Potri.001G471700 [exp]	29.08	0.6432	ARP8.2,ARP908

Compare expression of checked genes

Potri.003G018800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.