Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71220 2372 / 0 UGGT, PSL2, EBS1 PRIORITY IN SWEET LIFE 2, EMS-mutagenized bri1 suppressor 1, UDP-glucose:glycoprotein glucosyltransferases;transferases, transferring hexosyl groups;transferases, transferring glycosyl groups (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G129400 [exp] 53 / 1e-06 AT1G13250 521 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.008G018100 [exp] 45 / 0.0004 AT3G06260 533 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Potri.014G125000 [exp] 44 / 0.0007 AT3G62660 596 / 0.0 galacturonosyltransferase-like 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015475 [exp] 2339 / 0 AT1G71220 2136 / 0.0 PRIORITY IN SWEET LIFE 2, EMS-mutagenized bri1 suppressor 1, UDP-glucose:glycoprotein glucosyltransferases;transferases, transferring hexosyl groups;transferases, transferring glycosyl groups (.1.2) Lus10019946 [exp] 1574 / 0 AT1G71220 1474 / 0.0 PRIORITY IN SWEET LIFE 2, EMS-mutagenized bri1 suppressor 1, UDP-glucose:glycoprotein glucosyltransferases;transferases, transferring hexosyl groups;transferases, transferring glycosyl groups (.1.2) Lus10012765 [exp] 51 / 6e-06 AT3G06260 519 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Lus10034012 [exp] 49 / 3e-05 AT3G06260 522 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF06427 [poplar] [flax] UDP-g_GGTase UDP-glucose:Glycoprotein Glucosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.003G018900.1 pacid=42784629 polypeptide=Potri.003G018900.1.p locus=Potri.003G018900 ID=Potri.003G018900.1.v4.1 annot-version=v4.1 ATGGGGACCCGTTTTAGATCCGGTTCTTGTGTTCTTGTCATTCTAGTTTGTGTTGTAGGATTTTGTGGGTTTGGTTCGGTTTCTTGTGGGGAGAATCGAA GGCCCAAAAACGTTCAGGTTGCTGTTCGGGCTAAATGGGAGGGCACTCCAATTTTATTGGAAGCTGGGGAATTACTATCTAAGGAAAGGAAAGACATTTA TTGGGAGTTCATTGATAGCTGGCTTCATTCAAAGAAGGAAGATAATGATTCTTATACCGCTAAAGATTGCCTCAAAAAAATTATGAAACATGGACATGCT CTTTTAAGTGACACATTGGCCTCACTATTTGATTTTTCTCTTATTCTAAGATCTGCATCCCCAAGATTGGTGCTTTACAGACAGCTAGCAGAGGAGTCTC TTTCTTCTTTTCCGCTTTTGGATGATAGTTTCTCAAACAATGCTAGTGGGGGCCTTGCCAAAACAAATGATACCAATGAAATGAAAAGGTCAGATCCCTT GCTTGTGGGAAGAAATCCTGAAATTCCTGGTGGGAAATGCTGTTGGGTGGATACTGGTGCGGCATTGTTCTATGATGTTGCGGATTTGCTATTGTGGCTT CATAGCCCTACTGGAATGGCAGAGGACTCGTTTCAGCAACCCGAACTATTTGATTTTGATCATGTTCATTTTGAATCACTTTCTGGAAGTCCAGTTACTA TTCTGTATGGAGCTCTTGGAACTGATTGCTTTAAGGAGTTTCATTCCGCCTTGGTGGAAGCTGCCAAACAGGGGAAGGTAAAATATGTAGTTAGACCTGT TTTACCTTCTGGCTGTGAATCAAAAGTTGGGCGGTGTGTTGCTGTTGGGGCGAGTGACTCCTTAAATTTAGGTGGTTATGGTGTAGAACTTGCTCTGAAG AATATGGAATATAAGGCCATGGATGATAGTGCAATAAAGAAAGGTGTCACTTTGGAGGATCCTCGGACTGAAGATCTTAGCCAAGAAGTTAGAGGGTTCA TTTTTTCCAAAATACTGGAACGTAAACCTGAGCTTACATCAGAGATTATGGCTTTCCGAGACTATTTATTGTCGTCAACAATATCTGATACACTTGATGT TTGGGAACTAAAGGATCTAGGACATCAAACAGCACAAAGAATAGTTCATGCCTCTGACCCTCTACAATCAATGCAGGAAATCAACCAAAATTTTCCTAGT GTAGTTTCTTCTTTGTCTCGCATGAAGCTCAAGGATTCTGTTAAAGATGAGATAACTGCAAACCAGCGAATGATCCCTCCCGGCAAGTCCTTAATGGCTC TGAATGGTGCTTTAATCAATATTGAGGATATTGACCTTTATCTGTTGGTAGACATGGTCCAGCAGGAATTATCATTGGCCGATCAATTTTCTAAATTGAA GGTTCCTCACAGCACAATAAGGAAACTTCTTTCGACAGCGTCTCCTCCTGAATCCAGTATGATCCGTGTTGATTTTCGTTCAAGTCATGTTCATTATCTT AATAACTTAGAGGAGGATGCCATGTATAAGCGGTGGAGGAACAATATAAATGAGATTTTGATGCCTGTCTTCCCTGGACAGCTACGTTACATCCGCAAGA ACCTGTTTCATGCTGTTTATGTTCTTGATCCAGCCACTAGTTGCGGTCTTGAGTCTGTCGACATGATTTTGTCTTTGTATGAGAACAACTTCCCAATGAG ATTTGGATTGATTCTATATTCTTCAAAGTTTATCAAGAAAGCAACTAGTCGTGGCCTACATTTATCTGCTGAGGAGAATGATGGTGAAATTGAGGAGGAT ATATCTAGTTTGATCATACGTCTTTTCATATATATTAAGGAAAGCTACGGGACACCAACAGCTTTCCAGTTTCTGAGCAATGTAAACAGATTACGCATGG AGTCAGATTCTGAAGATGATGTTCCTGAAACACACCATGTGGACGGAGCATTTGTGGATACCATATTACCAAAGGTAAAAACCCCTCCTCAAGATATATT GCTAAAACTGGCAAAGGAGCAAACCTATAAGGAACTGTCACAAGAAAGCTCCATGTTCGTGTTTAAGCTGGGTTTGAACAAGTTGCAGTGTTGCCTCTTA ATGAACGGTCTTGTCTTTGATTCTAGTGAGGAGGTTCTTATGAACGCCATGAATGATGAGCTTCCCAGAATACAAGAGCAAGTTTATTATGGGCAAATAA ATTCTCACACTGATGTGCTGGACAAATTCCTGTCAGAAAGTGGTATTGGCCGCTACAATCCACAGATCATTGCTGAAGGCAAGGCCAAACCAAGGTTTAT TTCTCTGACTTCGGGAGTTCTTGGAGGGAAATCTGTGGTGAATGATATTAACTTCTTGCATTCCCCTGGAACTGTAGATGATGTGAAACCTGTAACTCAT CTCCTTGCTGTTGACATCACATCAAAGAAGGGGATAAACTTGCTTCATGAAGGAATACGCTATCTGATAGAAGGGTCTAAGGGTGCTCGCTTGGGTGTCC TCTTTAGTTCCAGTCAAGATTCTGATTTACCTGGTCTCCTTCTTGTGAAGGTTTTTGAAATCACCACTGCCTCTTACAGTCATAAGAAAAATGTGTTGAA CTTTTTGGAGCATTTATGTTCATTTTATGAGCAAAAGTACATCCAGGCATCATCTGTAGCAGCTGAAAGCACTCAAACGTTTATAGACAAGGTGTATGAT CTGGCTGATGCAAATGAGCTACCACAGAAGGCCTACAAGTCCATCCTTTCTGAATTTTCTGCTGACAAAGTGAAAAATCAATTGAATAAGGTGTCACAAT TTTTTTACCTGCTTCTTGGGCTTGAATCTGGAGTGAATGCGGTCATTACCAATGGAAGGGTGATGTTTCCTGGTGATGAAGGCACCTTTTTGAGTCATGA TTTACATCTTCTAGAGACGATGGAGTTCAAGCAAAGAGTAAAGCACATTGGAGAAATTATTGAAGAAGTGCAGTGGCAGGATGTAGACCCTGACATGCTA ACAAGCAAATTTGTCAGCGATATTATAATGTATGTGTCATCTGCAATGGCAATGCGGGAAAGAAGTTCAGAAAGTGCACGCTTTGAGATTTTGAATGCTG AACATAGTGCTGTTATTATAGATAATGAAAATTCCAGTGTTCATATTGATGCTGTTGTTGATCCTTTAAGCGCAGCTGGTCAGAAGGTTTCTTCACTTCT TAGAGTTCTAAGGAAATATGTTCAACCAAGCATGAGAATCGTGCTAAACCCTATGAGTTCTCTTGTTGATCTTCCGCTGAAGAATTACTATAGATATGTG GTCCCAACCATGGATGATTTCAGCAGCACTGATTTAACAGTAAATGGTCCTAAAGCATTTTTTGCAAATATGCCATTATCGAAGACTCTTACCATGAACC TTGATGTTCCTGAGCCCTGGCTTGTTGAGCCTGTTATTGCTGTCCATGATTTGGATAATATTTTGCTTGAGAACCTGGGTGACACTAGAACATTGCAAGC AGTTTTTGAACTTGAAGCACTTGTTCTTACTGGTCATTGTTCAGAGAAAGATCATGAACCCCCCCGAGGACTTCAGCTAATTCTTGGAACTAAGAGTAAT CCTCACTTGGTTGATACACTTGTGATGGCCAATTTGGGTTATTGGCAAATGAAAGTCTCTCCTGGGGTGTGGTATCTTCAACTTGCTCCAGGTCGAAGCT CTGAGCTGTATGCTTTTAGGGAAGGTGGTGATGGAAGTCAGGAAAAGCATCTGTCGAAACTTATCACTATTAATGATTTGCGAGGCAAGGTAGTTCATCT AGAAGTGGTGAAGAAAAAGGGCATGGAGCATGAGAAACTGCTCATTTCAAGTGATGATGATAACAATTCACAAAGGAAGGGAACTCATGATAGCTGGAAC TCCAATTTGTTTAAATGGGCTTCTGGCTTTATTGGCGGCGGCGGGCTTTCCAAGAAGAATGAGAGTGCTTTAATGGAGCATGAGAAGCGTGGACGGCATG GAAAAACTATTAATATCTTCTCTATTGCTTCTGGGCATCTATATGAACGTTTCCTTAAAATCATGATTCTAAGTGTCTGGAAGAACACCCAGCGTCCAGT GAAATTTTGGTTTATAAAGAACTATCTCTCTCCGCAATTTAAGGATGTGATTCCACATATGGCACAAGAGTATGGTTTTGAGTACGAACTGGTCACTTAT AAATGGCCATCATGGTTGCATAAGCAGACAGAAAAGCAGCGAATTATTTGGGCATATAAGATTTTGTTCCTTGATGTTATCTTTCCACTTTCTTTGGAGA GGGTTATATTTGTTGATGCTGATCAGGTTGTGCGAGCAGACATGGGAGAACTGTATGACATGGATATAAAAGGAAGACCTCTTGCTTATACACCATTCTG TGATAACAACAGAGATATGGATGGATATCGATTTTGGAGCCAAGGATTCTGGAAAGAACATTTGCGGGGAAGACCATATCATATCAGTGCTTTGTACATT GTTGATCTGGTTAAATTTCGAGAGACAGCTGCAGGAGATAATCTAAGGGTTTTCTATGAAACACTGAGCAAGGATCCAAATAGTCTTTCAAATTTGGATC AGGATCTTCCGAACTATGCTCAGCATACAGTACCCATCTTTTCACTGCCTCAAGAATGGTTGTGGTGCGAATCATGGTGTGGTAATGCTACGAAATCCAG AGCAAAAACTATTGATCTTTGCAACAATCCCATGACAAAGGAACCCAAGCTTCAGGGCGCAAAAAGAATAGTTTCGGAATGGGTTAATCTTGACTCTGAG GCGAGACACTTCACTGCAAAAATCTTAGGGGATGAAGTAAATCCTCAAGAACTTGTTTCCCCCAACCAATCACAGGCAAAAATCTTAGGTGATGAAGTAA ATCCTCAAGAACTTGTGTCCCCCAACCAATCACAGGACTATCAAACTGATAATTCACTGGAGGAAGACGCTGAATCCAAGTCTGAATTATGA
AA sequence Show only first row Show all	>Potri.003G018900.1 pacid=42784629 polypeptide=Potri.003G018900.1.p locus=Potri.003G018900 ID=Potri.003G018900.1.v4.1 annot-version=v4.1 MGTRFRSGSCVLVILVCVVGFCGFGSVSCGENRRPKNVQVAVRAKWEGTPILLEAGELLSKERKDIYWEFIDSWLHSKKEDNDSYTAKDCLKKIMKHGHA LLSDTLASLFDFSLILRSASPRLVLYRQLAEESLSSFPLLDDSFSNNASGGLAKTNDTNEMKRSDPLLVGRNPEIPGGKCCWVDTGAALFYDVADLLLWL HSPTGMAEDSFQQPELFDFDHVHFESLSGSPVTILYGALGTDCFKEFHSALVEAAKQGKVKYVVRPVLPSGCESKVGRCVAVGASDSLNLGGYGVELALK NMEYKAMDDSAIKKGVTLEDPRTEDLSQEVRGFIFSKILERKPELTSEIMAFRDYLLSSTISDTLDVWELKDLGHQTAQRIVHASDPLQSMQEINQNFPS VVSSLSRMKLKDSVKDEITANQRMIPPGKSLMALNGALINIEDIDLYLLVDMVQQELSLADQFSKLKVPHSTIRKLLSTASPPESSMIRVDFRSSHVHYL NNLEEDAMYKRWRNNINEILMPVFPGQLRYIRKNLFHAVYVLDPATSCGLESVDMILSLYENNFPMRFGLILYSSKFIKKATSRGLHLSAEENDGEIEED ISSLIIRLFIYIKESYGTPTAFQFLSNVNRLRMESDSEDDVPETHHVDGAFVDTILPKVKTPPQDILLKLAKEQTYKELSQESSMFVFKLGLNKLQCCLL MNGLVFDSSEEVLMNAMNDELPRIQEQVYYGQINSHTDVLDKFLSESGIGRYNPQIIAEGKAKPRFISLTSGVLGGKSVVNDINFLHSPGTVDDVKPVTH LLAVDITSKKGINLLHEGIRYLIEGSKGARLGVLFSSSQDSDLPGLLLVKVFEITTASYSHKKNVLNFLEHLCSFYEQKYIQASSVAAESTQTFIDKVYD LADANELPQKAYKSILSEFSADKVKNQLNKVSQFFYLLLGLESGVNAVITNGRVMFPGDEGTFLSHDLHLLETMEFKQRVKHIGEIIEEVQWQDVDPDML TSKFVSDIIMYVSSAMAMRERSSESARFEILNAEHSAVIIDNENSSVHIDAVVDPLSAAGQKVSSLLRVLRKYVQPSMRIVLNPMSSLVDLPLKNYYRYV VPTMDDFSSTDLTVNGPKAFFANMPLSKTLTMNLDVPEPWLVEPVIAVHDLDNILLENLGDTRTLQAVFELEALVLTGHCSEKDHEPPRGLQLILGTKSN PHLVDTLVMANLGYWQMKVSPGVWYLQLAPGRSSELYAFREGGDGSQEKHLSKLITINDLRGKVVHLEVVKKKGMEHEKLLISSDDDNNSQRKGTHDSWN SNLFKWASGFIGGGGLSKKNESALMEHEKRGRHGKTINIFSIASGHLYERFLKIMILSVWKNTQRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELVTY KWPSWLHKQTEKQRIIWAYKILFLDVIFPLSLERVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNRDMDGYRFWSQGFWKEHLRGRPYHISALYI VDLVKFRETAAGDNLRVFYETLSKDPNSLSNLDQDLPNYAQHTVPIFSLPQEWLWCESWCGNATKSRAKTIDLCNNPMTKEPKLQGAKRIVSEWVNLDSE ARHFTAKILGDEVNPQELVSPNQSQAKILGDEVNPQELVSPNQSQDYQTDNSLEEDAESKSEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71220		UGGT, PSL2, EBS...	PRIORITY IN SWEET LIFE 2, EMS-...		Potri.003G018900 [exp]	0	1
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Potri.004G229300 [exp]	1.41	0.7372	CAND1.3
AT1G77320		MEI1	meiosis defective 1, transcrip...		Potri.005G182500 [exp]	11.31	0.6990
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Potri.002G221300 [exp]	12.96	0.7265
AT4G22670		ATHIP1, TPR11	tetratricopeptide repeat 11, H...		Potri.001G118900 [exp]	14.56	0.6222
AT2G28450	C3HZnF		zinc finger (CCCH-type) family...		Potri.009G013000 [exp]	21.56	0.7059
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Potri.005G033700 [exp]	23.91	0.6230
AT2G41890			curculin-like (mannose-binding...		Potri.016G053800 [exp]	25.51	0.6420
AT4G10320			tRNA synthetase class I (I, L,...		Potri.017G033200 [exp]	29.69	0.7052
AT3G06530			ARM repeat superfamily protein...		Potri.003G151500 [exp]	31.60	0.6969
AT1G79950			RAD3-like DNA-binding helicase...		Potri.001G180200 [exp]	35.21	0.6949

Compare expression of checked genes

Potri.003G018900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.