Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60890 1004 / 0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT1G10900 1000 / 0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT3G09920 718 / 0 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) AT3G56960 517 / 6e-173 PIP5K4 phosphatidyl inositol monophosphate 5 kinase 4 (.1) AT1G21980 416 / 3e-134 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT1G77740 413 / 3e-133 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT2G26420 402 / 2e-129 PIP5K3 1-phosphatidylinositol-4-phosphate 5-kinase 3 (.1) AT3G07960 344 / 3e-107 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT2G41210 340 / 4e-105 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 (.1) AT4G01190 221 / 1e-64 ATPIPK10 phosphatidylinositol phosphate kinase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G211200 [exp] 1317 / 0 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.006G121200 [exp] 715 / 0 AT3G09920 1230 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Potri.001G027900 [exp] 546 / 0 AT3G07960 1107 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.003G196000 [exp] 522 / 1e-174 AT3G07960 1094 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.016G036800 [exp] 513 / 2e-171 AT3G56960 1214 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Potri.005G172800 [exp] 486 / 9e-161 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.004G139900 [exp] 399 / 5e-128 AT1G21980 948 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.002G088100 [exp] 358 / 1e-111 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.019G015768 [exp] 355 / 4e-111 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015456 [exp] 1115 / 0 AT1G60890 1036 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10001377 [exp] 1106 / 0 AT1G60890 1044 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10020821 [exp] 969 / 0 AT1G60890 935 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10012689 [exp] 963 / 0 AT1G60890 932 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10014408 [exp] 750 / 0 AT3G09920 1228 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10023909 [exp] 743 / 0 AT3G09920 1210 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10022606 [exp] 714 / 0 AT3G09920 1179 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10021505 [exp] 713 / 0 AT3G09920 1180 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10039011 [exp] 504 / 9e-168 AT3G56960 1174 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10018200 [exp] 488 / 2e-161 AT1G21980 1172 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF01504 [poplar] [flax] PIP5K Phosphatidylinositol-4-phosphate 5-Kinase CL0251 [poplar] [flax] MORN PF02493 [poplar] [flax] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Potri.003G019100.2 pacid=42785247 polypeptide=Potri.003G019150.1.p locus=Potri.003G019100 ID=Potri.003G019100.2.v4.1 annot-version=v4.1 ATGGTGCTCCTTCGTCACTTATTAGATATTGAAGACAGTGAAAGTATTGACAAGAAGGCCTTATCAAATGGAGAAGTCTATATTGGTATTTTCAAGGCAA CACTTCCTCATGGCAAGGGTAAATATATATGGTGTGATGGAACAGTCTACAAGGGTGACTGGGAAGAAGGTAAAATGACCGGGAAAGGACAGATACTTTG GTCTTCAGGAGCAAAATATGAAGGTGATTTCTCTGGCGGTTACCTTCATGGAATCGGCACCTTGATAGGACATGATGGGTCCGAATACAGAGGGGCCTGG AGAATGAATGTACGGCATGGGCTTGGAAGGAAACAATATTCTAATTTAGATGTTTATGAGGGTTCTTGGAAGGAAGGGATGCGTGAAGGCTGTGGTAGGT ACTCTTGGAATGGTGGAAATACATACATAGGGAATTGGAAAGGTGGAAAAATATGTGGCAGGGGGGTTATGAAATGGGAAAACGGTGATCTTTTTGATGG CTTTTGGATAAATGGCCTTAGACATGGATCTGGAGTTTATAGGTTTGCAGACGGGGGATACTACTTTGGAATGTGGAGTATGGGACTTAAGGATGGAAAA GGGACATTTTACCCAGCTGGAACCAAGCATCCATCTCTAAGGAGGTGGTGCAGCTCCTTAGGCTGTTATGAAAGTGGAAGAAATTTGTTGTCTCATAGTT CGTCTTTAAATTCAGAGAAAACCAGGGTTCTTATACCAAATGACATGCGCAGTCTATCTGAGAGAATGTCAATCAATGGAATCTTCAAAGATTCTGGCCG ATTCTCACAAGGAACTGTCTCACTAGATGAAAATTCGAGCCGTTGTAGCCTTGGCAGTGAATTTATATGCCGTGAACCATCATGTATGTTGTCCCAAACC TCTGATGAGGGTCAAAGTGGTGTGCAGGATAACTGTACAGTAGTTTATGAGAGGGAATACATGCAGGGAGTTTTGAAAAACGAGAAAGTTAAAAATACTG AACCATCCCGCAAAACTAAACAGAGAAACAAATTTCACGTGAAAGAAACAAAAAGGAAGTCATATGTGGACATTTTCCAAGGCCATTGGAGCTATTATCT AATGCTTAGTTTGCAACTTGGCATAAGGTACACTGTTGGCAAGATTACACCAGTGCCTATGCGTGGAGTTCGAGATTCTGATTTTGGAGATCGAGCTAGA ATAAGGATGTATTTCCCCAGAAAGGGTTCCCAGTTTACACCTCCACACTATTCTATTGATTTCTATTGGAAAGACTACTGCCCTATGGTCTTCAGGAATT TAAGGGAGATGTTTAAGCTCGATGCAGCTGAGTACATGATGTCCATCTGTGGTGATGATGGTCTAACGGAGCTTCCTTCCTCTGGAAAAAGCGGCAGTAT CTTCTTTCTTTCACATGATGATAGATTTGTGATTAAGACATTAAAAAAGTTCGAACTCAAGACCCTTCTTAAGATGCTTCCAAAATATTACATTCATGTA GGGAAGCATGAAAATACTCTCATCACAAAAATTTTTGGGGTCCACCGAATAACATTGAGAGGTGGGAAAAAGGTACGCTTTGTAGTCATGGGAAATATGT TTTGCACAGAATTAAGAATTCATGGTCGCTATGACCTGAAGGGGTCAACTCAAGGGAGATACACAGATAAAGACAAGGTTGGAGAAAATACCACATTAAA AGATCTTGATCTAGCATACGAGTTTCATATGGATAAGTTGTTGCGCGAATCTCTTTTCAAGCAACTCTCTTTGGACTGCAGTTTTTTAGAATCTCAACAG ATAATTGATTATAGTCTTCTATTGGGAATACATTTTAGAGCACCAGAACAGTTGAGAGCCATCTTAGAACCTCCTGCTACAATGCAAAATCATGCTACTT TGGCTACTTCTGATGGTATAAACTCACAAGGGCCGCTCGTGATTCCTCCGAAAGGCCTTCTCCTAGTAACCCATGAACCTAGCTCAGTGAGCACTACACC AGGATCTCACATCAGAGGAGATACATTGAAAGCAAATTCTGTTGGTGAGAAGGAGGTGGATCTCTTGCTGCCTGGCACTGGAAGGTTGCGGGTGCAGCTC GGAGTGAACATGCCAGCGCAGGCTAGCCACAAGCTTATGCAGGACGAGGTTGATTCTGCAGAGATTGAACTTTTCGAGGTTTATGATGTTGTTCTCTACA TGGGCGTAATTGATATACTACAGGAATACAAAGTGAAAAAGAAAGTTGAGCATGCATGCAAATCATTAAAATTTGACCCTCAGTCGATTTCTATTGTTGA GCCCAAATTGTACGCAAAACGTTTTATCAATTTCTTGCACAAAGTTTTCCCTCAGCAACCATGA
AA sequence Show only first row Show all	>Potri.003G019100.2 pacid=42785247 polypeptide=Potri.003G019150.1.p locus=Potri.003G019100 ID=Potri.003G019100.2.v4.1 annot-version=v4.1 MVLLRHLLDIEDSESIDKKALSNGEVYIGIFKATLPHGKGKYIWCDGTVYKGDWEEGKMTGKGQILWSSGAKYEGDFSGGYLHGIGTLIGHDGSEYRGAW RMNVRHGLGRKQYSNLDVYEGSWKEGMREGCGRYSWNGGNTYIGNWKGGKICGRGVMKWENGDLFDGFWINGLRHGSGVYRFADGGYYFGMWSMGLKDGK GTFYPAGTKHPSLRRWCSSLGCYESGRNLLSHSSSLNSEKTRVLIPNDMRSLSERMSINGIFKDSGRFSQGTVSLDENSSRCSLGSEFICREPSCMLSQT SDEGQSGVQDNCTVVYEREYMQGVLKNEKVKNTEPSRKTKQRNKFHVKETKRKSYVDIFQGHWSYYLMLSLQLGIRYTVGKITPVPMRGVRDSDFGDRAR IRMYFPRKGSQFTPPHYSIDFYWKDYCPMVFRNLREMFKLDAAEYMMSICGDDGLTELPSSGKSGSIFFLSHDDRFVIKTLKKFELKTLLKMLPKYYIHV GKHENTLITKIFGVHRITLRGGKKVRFVVMGNMFCTELRIHGRYDLKGSTQGRYTDKDKVGENTTLKDLDLAYEFHMDKLLRESLFKQLSLDCSFLESQQ IIDYSLLLGIHFRAPEQLRAILEPPATMQNHATLATSDGINSQGPLVIPPKGLLLVTHEPSSVSTTPGSHIRGDTLKANSVGEKEVDLLLPGTGRLRVQL GVNMPAQASHKLMQDEVDSAEIELFEVYDVVLYMGVIDILQEYKVKKKVEHACKSLKFDPQSISIVEPKLYAKRFINFLHKVFPQQP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60890			Phosphatidylinositol-4-phospha...		Potri.003G019100 [exp]	0	1
AT2G26850			F-box family protein (.1)		Potri.016G035900 [exp]	2.82	0.8329
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.006G013200 [exp]	3.46	0.8296
					Potri.001G182801 [exp]	4.47	0.7990
AT1G30760			FAD-binding Berberine family p...		Potri.001G463550 [exp]	7.34	0.8022
AT2G36710			Pectin lyase-like superfamily ...		Potri.006G120100 [exp]	8.00	0.8099
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Potri.013G132000 [exp]	8.48	0.8080
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.008G224075 [exp]	11.18	0.8097
AT5G16720			Protein of unknown function, D...		Potri.004G087600 [exp]	12.48	0.7889
AT3G13062			Polyketide cyclase/dehydrase a...		Potri.007G002700 [exp]	16.27	0.7203
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Potri.010G101800 [exp]	16.30	0.8046	Pt-ANN5.1

Compare expression of checked genes

Potri.003G019100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.