Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09580 275 / 1e-94 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G57620 256 / 3e-87 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G21900 238 / 5e-80 emp24/gp25L/p24 family/GOLD family protein (.1) AT3G10780 188 / 3e-60 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G26690 156 / 7e-48 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G14010 152 / 3e-46 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G69460 149 / 3e-45 emp24/gp25L/p24 family/GOLD family protein (.1) AT2G03290 141 / 6e-42 emp24/gp25L/p24 family/GOLD family protein (.1) AT3G29070 130 / 2e-37 emp24/gp25L/p24 family/GOLD family protein (.1) AT2G03040 92 / 2e-23 emp24/gp25L/p24 family/GOLD family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G210900 [exp] 342 / 3e-121 AT1G09580 268 / 7e-92 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.002G085300 [exp] 259 / 4e-88 AT1G09580 280 / 2e-96 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.004G127200 [exp] 169 / 4e-53 AT1G26690 253 / 5e-86 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.008G090700 [exp] 166 / 8e-52 AT1G26690 308 / 1e-107 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.010G164600 [exp] 160 / 1e-49 AT1G69460 272 / 3e-93 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.017G086900 [exp] 158 / 9e-49 AT1G26690 282 / 2e-97 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.018G145544 [exp] 89 / 2e-22 AT1G26690 194 / 8e-64 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.010G081700 [exp] 61 / 4e-11 AT3G22845 366 / 1e-130 emp24/gp25L/p24 family/GOLD family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022972 [exp] 276 / 6e-95 AT1G09580 297 / 3e-103 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10001615 [exp] 275 / 9e-95 AT1G09580 294 / 4e-102 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10041939 [exp] 239 / 3e-80 AT1G21900 286 / 1e-98 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10037143 [exp] 149 / 2e-45 AT1G26690 249 / 2e-85 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10005227 [exp] 147 / 4e-44 AT1G26690 231 / 4e-77 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10036786 [exp] 145 / 5e-43 AT1G26690 275 / 3e-94 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10030693 [exp] 141 / 3e-42 AT1G26690 218 / 2e-72 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10030436 [exp] 139 / 7e-41 AT1G26690 263 / 2e-89 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10026625 [exp] 119 / 3e-33 AT1G26690 197 / 9e-64 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10039381 [exp] 63 / 7e-12 AT3G22845 350 / 1e-124 emp24/gp25L/p24 family/GOLD family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0521 [poplar] [flax] GOLD-like PF01105 [poplar] [flax] EMP24_GP25L emp24/gp25L/p24 family/GOLD
Representative CDS sequence Show only first row Show all	>Potri.003G019300.1 pacid=42786377 polypeptide=Potri.003G019300.1.p locus=Potri.003G019300 ID=Potri.003G019300.1.v4.1 annot-version=v4.1 ATGGCGGCGCGTGGGAAGATGGTGCTGGGTTGCATTTTAGGAGTATTGATTTGTAGCAGCAATCTTTTCACGGTTAGCCAAGGGGTGTGGTTGAATCTGC CTCCTACCGGTACCAAGTGCGTGTCCGAGGAAATCCACAATAACGTCGTAGTTTTGTCTGATTACGTTGTCGTTTCCGATGACCATTCCCATATCCCCAC CATCTCTGTTAAGGTGACATCACCATATGGGAACACCCTTCACCAAACAGAGAATGTGACTCATGGTCAGTTTGCATTCACGACTCATGAGGCTGGCAAT TACCTGGCATGTTTTTGGGTGGATGGTCATGTTCAAGGAGATGTGAGTGTTAACATTGATTGGAAAACTGGAATTGCTGCTAAGGATTGGGATTCAGTTG CTAGAAAAGAGAAGATAGAGGGTGTTGAACTTGAGCTGAGGAAACTTGAAGGAGCTGTGGAGGCCATCCATGAGAATCTACTCTATCTCAAAACAAGGGA AGCAGAGATGAGGTCCGTGAGCGAAACAACAAATACCAGAATAGCATTATTTAGTGTCATGTCATTGGGTGTCTGCATTGCTGTTTCAGCACTGCAAGTG TGGCACTTGAAACACTACTTCCAAAAGAAGAAGCTCATTTAG
AA sequence Show only first row Show all	>Potri.003G019300.1 pacid=42786377 polypeptide=Potri.003G019300.1.p locus=Potri.003G019300 ID=Potri.003G019300.1.v4.1 annot-version=v4.1 MAARGKMVLGCILGVLICSSNLFTVSQGVWLNLPPTGTKCVSEEIHNNVVVLSDYVVVSDDHSHIPTISVKVTSPYGNTLHQTENVTHGQFAFTTHEAGN YLACFWVDGHVQGDVSVNIDWKTGIAAKDWDSVARKEKIEGVELELRKLEGAVEAIHENLLYLKTREAEMRSVSETTNTRIALFSVMSLGVCIAVSALQV WHLKHYFQKKKLI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09580			emp24/gp25L/p24 family/GOLD fa...		Potri.003G019300 [exp]	0	1
AT3G24315		ATSEC20	Sec20 family protein (.1)		Potri.010G064900 [exp]	1.73	0.8032
AT3G24160		PMP	putative type 1 membrane prote...		Potri.003G178400 [exp]	2.44	0.8416	Pt-PMP.2
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Potri.014G137100 [exp]	3.31	0.7643
AT1G02305			Cysteine proteinases superfami...		Potri.014G109801 [exp]	4.89	0.8044
AT3G10640		VPS60.1	SNF7 family protein (.1.2)		Potri.010G242700 [exp]	5.65	0.7491
AT1G69980			unknown protein		Potri.008G191700 [exp]	7.48	0.8004
AT1G67190			F-box/RNI-like superfamily pro...		Potri.009G164200 [exp]	10.19	0.7747
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Potri.006G155800 [exp]	16.43	0.7909
AT1G23750			Nucleic acid-binding, OB-fold-...		Potri.010G041000 [exp]	22.95	0.7290
AT2G45260			Plant protein of unknown funct...		Potri.002G145900 [exp]	23.02	0.7679

Compare expression of checked genes

Potri.003G019300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.