Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10780 586 / 0 F-box/RNI-like superfamily protein (.1) AT1G67190 56 / 2e-08 F-box/RNI-like superfamily protein (.1.2) AT4G09920 48 / 6e-06 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT3G50710 47 / 1e-05 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G58980 42 / 0.0005 F-box family protein (.1) AT5G56560 42 / 0.001 FBD, F-box and Leucine Rich Repeat domains containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G210800 [exp] 753 / 0 AT1G10780 549 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.005G140000 [exp] 49 / 2e-06 AT5G67140 334 / 2e-117 F-box/RNI-like superfamily protein (.1) Potri.009G164200 [exp] 49 / 4e-06 AT1G67190 613 / 0.0 F-box/RNI-like superfamily protein (.1.2) Potri.004G203300 [exp] 47 / 1e-05 AT1G67190 654 / 0.0 F-box/RNI-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022971 [exp] 599 / 0 AT1G10780 534 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10001614 [exp] 596 / 0 AT1G10780 533 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10039564 [exp] 49 / 2e-06 AT5G67140 317 / 1e-110 F-box/RNI-like superfamily protein (.1) Lus10004875 [exp] 48 / 8e-06 AT1G67190 619 / 0.0 F-box/RNI-like superfamily protein (.1.2) Lus10020611 [exp] 47 / 3e-05 AT1G67190 616 / 0.0 F-box/RNI-like superfamily protein (.1.2) Lus10042331 [exp] 43 / 0.0002 AT3G18150 67 / 7e-13 RNI-like superfamily protein (.1) Lus10014141 [exp] 43 / 0.0004 AT3G18150 70 / 5e-13 RNI-like superfamily protein (.1) Lus10038967 [exp] 42 / 0.001 AT3G18150 77 / 9e-15 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G019400.7 pacid=42786866 polypeptide=Potri.003G019400.7.p locus=Potri.003G019400 ID=Potri.003G019400.7.v4.1 annot-version=v4.1 ATGGAATCTCTCCCGGATGCTGTTGTTCAATACATCTTCTCATTCATGAACAATGCAAGGGATGTTGCCGTCTGTAATTGCGTATCGAAGCGATGGAAGG ACTCTTTGCCTTACATCAAAAGCCTCTACTTCCCCAGGAACTCTTTTGACAACCACTCTGGCATCGACCATCCTGATACCGCTGTGTGGAAGATGATATC ATCAGTTGTTAAATTAGAAGAGCTTGTTGTATACAGCCCCTTCTCGAGCATAGGTCTTGCCTCATGGATGCTGCTTGTGGGGTCATCGCTCAAACATCTT GAGCTTAGAATGGACAATCTTGCTGAATACCAGAACTGTACTGAGAGCCCGTCGAAACTGGAATGCATTAGCACTGCAAAGAATTTGGAGTCTTTAAAGC TTTGGGGTGTCCTAATGATGAACTCTCCCAAGTGGGATGCCTTTCCAAAACTTCAAAGCCTTGAGATTGTCGGCGCTAAATTGGAAGATCCTGCATTAAC TGCCGCCCTTCAGGCATGCCCGAATTTGAAAAACTTGTTGCTACTCGGGTGTGAAGGGGTTAGGTCAGTTTTGATCGAGTTGCCTAGCTTGGAGCAATGC AAGCTGGACTTTTATGGTGTGGGTAATTATTCACTAACCTTGACTTCACCTAAAATTGAATTCCTCGAGGTTCAAGGCTGTAGTTGGATCAGTGTTCGTG AGACTGCTTGCCTGAGGAGTCTTTCAATTTCAAATAATGCTGGGAGAGTTTATATGGTAGATTTTGGAAAACTCGCGGCCCTGGAGTTCCTGTCTATTAG GGGAGTCCAATGGTGTTGGAATGCAATAAGTAAAATGCTTCAGTTGGCAAGTGAGGTGAAGCATCTGTACATGAAGGTTGAATTTACCGGGGACTTTGAC AACCTCCAACCCTTTCCAGAGATTGACTTCGTTGATTTTTTTAATAGCCATCCCAAGCTTCAAAAATTCGATATCCATGGAGCAATGTTCGCTGCTCTCT GTCAAAAGAACAGCTTGAAAAATGTGCAGTCTGGGTTTGTGATTCCTTGTCTGGAGGAGGTGGTGATAACGGTCAGATCACCGTTGAATGCCGAGCAGAA GATAAGCACCCTTGAGTCGCTCTTGAAGTACGGGAAGGTTATAAAGTCGATGGCAATAAGGATTCTTCAGATGAGGAGCAGCCATAGCAGTGCAGATGAT TTCTTTGATGAGATTTGCAGGTTTCAACGCATGAATCACAATACTGTTCGAATAGAATAA
AA sequence Show only first row Show all	>Potri.003G019400.7 pacid=42786866 polypeptide=Potri.003G019400.7.p locus=Potri.003G019400 ID=Potri.003G019400.7.v4.1 annot-version=v4.1 MESLPDAVVQYIFSFMNNARDVAVCNCVSKRWKDSLPYIKSLYFPRNSFDNHSGIDHPDTAVWKMISSVVKLEELVVYSPFSSIGLASWMLLVGSSLKHL ELRMDNLAEYQNCTESPSKLECISTAKNLESLKLWGVLMMNSPKWDAFPKLQSLEIVGAKLEDPALTAALQACPNLKNLLLLGCEGVRSVLIELPSLEQC KLDFYGVGNYSLTLTSPKIEFLEVQGCSWISVRETACLRSLSISNNAGRVYMVDFGKLAALEFLSIRGVQWCWNAISKMLQLASEVKHLYMKVEFTGDFD NLQPFPEIDFVDFFNSHPKLQKFDIHGAMFAALCQKNSLKNVQSGFVIPCLEEVVITVRSPLNAEQKISTLESLLKYGKVIKSMAIRILQMRSSHSSADD FFDEICRFQRMNHNTVRIE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10780			F-box/RNI-like superfamily pro...		Potri.003G019400 [exp]	0	1
AT1G76540		CDKB2;1	cyclin-dependent kinase B2;1 (...		Potri.002G003400 [exp]	5.19	0.9113	CDKB2.1
AT3G08943			ARM repeat superfamily protein...		Potri.006G103300 [exp]	11.61	0.8773
AT5G06590			unknown protein		Potri.016G064200 [exp]	14.49	0.8820
AT3G20000		TOM40	translocase of the outer mitoc...		Potri.007G000200 [exp]	17.14	0.8694	Pt-TOM40.1
AT1G67820			Protein phosphatase 2C family ...		Potri.010G047600 [exp]	22.91	0.8712
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Potri.014G155900 [exp]	31.11	0.8727
AT4G33400			Vacuolar import/degradation, V...		Potri.002G126500 [exp]	34.29	0.8564
AT5G45700			Haloacid dehalogenase-like hyd...		Potri.004G062900 [exp]	39.34	0.8650
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Potri.002G080000 [exp]	39.68	0.8680
AT1G72670		IQD8	IQ-domain 8 (.1)		Potri.003G042700 [exp]	44.18	0.8673

Compare expression of checked genes

Potri.003G019400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.