Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25290 354 / 3e-122 ATRBL10 RHOMBOID-like protein 10 (.1.2) AT5G38510 86 / 2e-18 Rhomboid-related intramembrane serine protease family protein (.1.2) AT1G77860 75 / 6e-15 KOM KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) AT5G07250 74 / 8e-15 ATRBL3 RHOMBOID-like protein 3 (.1.2) AT1G63120 73 / 2e-14 ATRBL2 RHOMBOID-like 2 (.1) AT1G52580 73 / 2e-14 ATRBL5 RHOMBOID-like protein 5 (.1) AT2G29050 73 / 3e-14 ATRBL1 RHOMBOID-like 1 (.1.2) AT1G12750 66 / 5e-12 ATRBL6 RHOMBOID-like protein 6 (.1.2.3) AT3G53780 65 / 1e-11 ATRBL4 RHOMBOID-like protein 4 (.1.2) AT4G23070 57 / 4e-09 ATRBL7 RHOMBOID-like protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G142000 [exp] 85 / 2e-18 AT5G07250 294 / 2e-98 RHOMBOID-like protein 3 (.1.2) Potri.017G112900 [exp] 84 / 1e-17 AT5G38510 364 / 3e-122 Rhomboid-related intramembrane serine protease family protein (.1.2) Potri.012G139600 [exp] 81 / 3e-17 AT5G07250 324 / 6e-110 RHOMBOID-like protein 3 (.1.2) Potri.001G241300 [exp] 73 / 3e-14 AT2G29050 441 / 6e-155 RHOMBOID-like 1 (.1.2) Potri.009G031900 [exp] 73 / 3e-14 AT2G29050 434 / 7e-152 RHOMBOID-like 1 (.1.2) Potri.006G086300 [exp] 72 / 6e-14 AT2G29050 422 / 6e-147 RHOMBOID-like 1 (.1.2) Potri.003G122900 [exp] 70 / 2e-13 AT1G63120 374 / 3e-130 RHOMBOID-like 2 (.1) Potri.002G090400 [exp] 70 / 4e-13 AT1G77860 298 / 1e-98 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) Potri.001G108700 [exp] 68 / 1e-12 AT1G63120 332 / 8e-114 RHOMBOID-like 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022969 [exp] 387 / 3e-135 AT1G25290 309 / 3e-104 RHOMBOID-like protein 10 (.1.2) Lus10001612 [exp] 297 / 4e-100 AT1G25290 242 / 2e-78 RHOMBOID-like protein 10 (.1.2) Lus10023145 [exp] 92 / 1e-20 AT5G38510 339 / 7e-114 Rhomboid-related intramembrane serine protease family protein (.1.2) Lus10000628 [exp] 90 / 6e-20 AT5G38510 335 / 3e-112 Rhomboid-related intramembrane serine protease family protein (.1.2) Lus10027436 [exp] 76 / 3e-15 AT5G07250 392 / 1e-135 RHOMBOID-like protein 3 (.1.2) Lus10017840 [exp] 74 / 8e-15 AT1G63120 441 / 9e-157 RHOMBOID-like 2 (.1) Lus10024497 [exp] 74 / 1e-14 AT1G63120 450 / 2e-160 RHOMBOID-like 2 (.1) Lus10004965 [exp] 74 / 2e-14 AT2G29050 486 / 6e-173 RHOMBOID-like 1 (.1.2) Lus10005464 [exp] 73 / 4e-14 AT2G29050 453 / 1e-159 RHOMBOID-like 1 (.1.2) Lus10023789 [exp] 69 / 8e-13 AT2G29050 488 / 3e-173 RHOMBOID-like 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [poplar] [flax] Rhomboid-like PF04511 [poplar] [flax] DER1 Der1-like family
Representative CDS sequence Show only first row Show all	>Potri.003G019500.1 pacid=42784849 polypeptide=Potri.003G019500.1.p locus=Potri.003G019500 ID=Potri.003G019500.1.v4.1 annot-version=v4.1 ATGATGGGGTCATCACTATCAGCTTCTCCGCAGCCGTTGTGGCGGGTCCCGATACAACCCTTGAATCTCATTACAACCGTCGCTTCTCTCCGCTTTGGCT TCCTTGTGCACTCCTCCTTCAAGAATATCTCTCATCTCTATCATGTTCCTAGATTGAAGGATGTGTGGCATGAAAAAGCCTCCCAGTTGCAGGGAATTGA CGTTCTTCAATTTTCAAATGATGTCTTTGCATCCACATGTTCATCTTGCTTGTGCTTCTTCAATGGAGGAGGGGCTAGAAAGGGCTTTAGAAATGAGGGA TCGCCAAACTTGGAGACATCCGGGAGAAGTTCATTTAATGGAAGACAATGGACTAATATTCTTCTCGCTATCAATATCTTAGTTTATTTTGCGCAAATTG CTACCCGAGGAAAGCTGTTGTTCTGGGGTGCTAAGGTTAACAGTCTTATTGACAAGGGACAATTTTGGAGGCTGGCCACTTCTTCTGTTCTGCATGCAAA TATTGGGCACCTCATGGTTAATTGCTATTCTTTGAATTCTGTTGGTCCTACCATTGAGAATCTTAGTGGCCCAAGAAGATTTATTGCAGTTTACCTCACC TCTGCAATTGCAAGTTCAGCAATGAGTTACTGGTTCTGCAGAGCACCTGCAGTCGGTGCCTCAGGAGCCATCTTTGGATTAGTTGGATCTCTTGCAGTGT TTGTCATAAGACACAGAAGAATGATCGGAGGTGGCAAAGAAGATCTACAGAACATAGCTAAAGTGATATTCCTCAATATGATGATCGGTTTATTAACAAA AGGCATTGATAACTGGGGACATCTGGGAGGCTTGCTTGGTGGAGTTGCCACATCTTGGTTTGTTGGACCTGCATGGCAGTATGGCCCCCAGTCGCATGAT GGTCGAAGAGTTTTCGTAGACAAGGCACCAATCAGGTATCTGACCAACAGAAAGACAGAACCGAAGAACTTTGGTTAA
AA sequence Show only first row Show all	>Potri.003G019500.1 pacid=42784849 polypeptide=Potri.003G019500.1.p locus=Potri.003G019500 ID=Potri.003G019500.1.v4.1 annot-version=v4.1 MMGSSLSASPQPLWRVPIQPLNLITTVASLRFGFLVHSSFKNISHLYHVPRLKDVWHEKASQLQGIDVLQFSNDVFASTCSSCLCFFNGGGARKGFRNEG SPNLETSGRSSFNGRQWTNILLAINILVYFAQIATRGKLLFWGAKVNSLIDKGQFWRLATSSVLHANIGHLMVNCYSLNSVGPTIENLSGPRRFIAVYLT SAIASSAMSYWFCRAPAVGASGAIFGLVGSLAVFVIRHRRMIGGGKEDLQNIAKVIFLNMMIGLLTKGIDNWGHLGGLLGGVATSWFVGPAWQYGPQSHD GRRVFVDKAPIRYLTNRKTEPKNFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G25290		ATRBL10	RHOMBOID-like protein 10 (.1.2...		Potri.003G019500 [exp]	0	1
AT5G18140			Chaperone DnaJ-domain superfam...		Potri.013G058100 [exp]	2.44	0.8631
AT5G52110		CCB2, HCF208	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.015G138400 [exp]	3.46	0.8607
AT4G01995			unknown protein		Potri.002G194500 [exp]	4.24	0.8831
AT2G35840			Sucrose-6F-phosphate phosphohy...		Potri.006G199800 [exp]	6.48	0.8555	Pt-SPP1.1
AT2G24220		ATPUP5	purine permease 5 (.1.2)		Potri.006G184900 [exp]	7.48	0.8351
AT5G13610			Protein of unknown function (D...		Potri.008G045200 [exp]	14.49	0.8111
AT3G55040		GSTL2	glutathione transferase lambda...		Potri.008G046800 [exp]	16.18	0.8676
					Potri.009G125700 [exp]	17.54	0.8230
AT3G57360			unknown protein		Potri.017G142200 [exp]	21.21	0.7876
AT1G45000			AAA-type ATPase family protein...		Potri.009G120500 [exp]	22.18	0.7862

Compare expression of checked genes

Potri.003G019500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.