Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24690 598 / 0 Protein of unknown function (DUF3411) (.1) AT5G22790 100 / 3e-22 RER1 reticulata-related 1 (.1) AT3G56140 94 / 7e-20 Protein of unknown function (DUF399 and DUF3411) (.1) AT2G40400 91 / 6e-19 Protein of unknown function (DUF399 and DUF3411) (.1), Protein of unknown function (DUF399 and DUF3411) (.2) AT2G37860 88 / 2e-18 LCD1 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) AT3G08640 63 / 2e-10 Protein of unknown function (DUF3411) (.1) AT3G08630 61 / 8e-10 Protein of unknown function (DUF3411) (.1) AT5G12470 61 / 8e-10 Protein of unknown function (DUF3411) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G210500 [exp] 770 / 0 AT5G24690 602 / 0.0 Protein of unknown function (DUF3411) (.1) Potri.016G103100 [exp] 97 / 2e-21 AT2G37860 510 / 2e-180 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Potri.008G074300 [exp] 95 / 3e-20 AT3G56140 968 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Potri.009G150400 [exp] 86 / 1e-17 AT5G22790 518 / 0.0 reticulata-related 1 (.1) Potri.001G262200 [exp] 66 / 2e-11 AT5G12470 471 / 1e-166 Protein of unknown function (DUF3411) (.1) Potri.006G111300 [exp] 64 / 1e-10 AT3G08640 349 / 8e-120 Protein of unknown function (DUF3411) (.1) Potri.001G256300 [exp] 63 / 2e-10 AT5G12470 443 / 3e-155 Protein of unknown function (DUF3411) (.1) Potri.009G051800 [exp] 61 / 6e-10 AT5G12470 467 / 1e-164 Protein of unknown function (DUF3411) (.1) Potri.016G140700 [exp] 61 / 8e-10 AT3G08640 357 / 5e-123 Protein of unknown function (DUF3411) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001610 [exp] 615 / 0 AT5G24690 572 / 0.0 Protein of unknown function (DUF3411) (.1) Lus10022966 [exp] 610 / 0 AT5G24690 573 / 0.0 Protein of unknown function (DUF3411) (.1) Lus10009845 [exp] 95 / 3e-20 AT3G56140 879 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10040960 [exp] 94 / 5e-20 AT3G56140 879 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10010224 [exp] 93 / 1e-19 AT3G56140 909 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10024346 [exp] 79 / 6e-16 AT2G37860 415 / 7e-146 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Lus10043364 [exp] 75 / 4e-14 AT5G22790 428 / 1e-148 reticulata-related 1 (.1) Lus10019744 [exp] 72 / 2e-13 AT5G12470 452 / 1e-159 Protein of unknown function (DUF3411) (.1) Lus10016379 [exp] 71 / 7e-13 AT5G12470 451 / 1e-158 Protein of unknown function (DUF3411) (.1) Lus10012657 [exp] 64 / 5e-11 AT2G37860 414 / 1e-144 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11891 [poplar] [flax] RETICULATA-like Protein RETICULATA-related
Representative CDS sequence Show only first row Show all	>Potri.003G019600.1 pacid=42786970 polypeptide=Potri.003G019600.1.p locus=Potri.003G019600 ID=Potri.003G019600.1.v4.1 annot-version=v4.1 ATGCCTCACTTTGTGTTACAAACAGCACAAATCCCTACTCCCACCACCAAAACAACCTTGTCGTTAAAACCCACCTTTCCGATTCCTCAGTTATGTCACC TGCGGAGGAGGGTTCGTAGTAATCGTAATCTTGACTTAAAGTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGTCCGATGATTGATGGTGGCGGAGA TTCCGTGGCTGCGTTGGAGAGATGCTTTTCAGCCCCGCCTGCCCCCGTCGTGGGAGACTTTGGTCCGGTTATGAAAGGAAAATTCGGTTCCTTAGGTGCT GTTACTTTGGAAAAAGGCAAACTTGATATGTCTCAGAAACAATCCCAGTCTACTCCTGAGGTTGCTCTTGGGGGAGGCGGTGGAGACATTGGAAAGCATA TCAATCATGGTGGCGGTGATGGAGGTGATGATGATGGTGATGATGATGATTACTTTGATGACTTCGACGATGGTGATGAGGGTGATGAGGGAGGATTATT TAGGAGAAGGATATTTCTTGAAGAGCTTTACGATCGAAAATTTGTTGATGCAGTGTTGAATGAGTGGCACAAAACAATGATGGATTTGCCTGCTGGGTTC CGACAAGCTTATGAAATGGGTTTGGTCAGCTCAGCTCAAATGGTAAAATTCCTAGCAATAAATGCCAGACCAACAACTACTAGGTTTATATCCAGAGCAC TTCCGCAAGCAATTTCTAGGGCATTTATTGGCAGGATGATTGCAGACCCTGCCTTTTTATATAGGCTTCTTTTGGAGCAGGCTGCTACAGTTGGTTGCTC TGTTTGGTGGGAGTTGAAAAATCGCAAGGATAGGATAAAACAAGAATGGGATCTGGCTCTTATAAATGTCCTAACAGTAACAGCATGCAATGCCCTTGTT GTTTGGTCGCTTGCTCCTTGTCGTTCTTATGGAAACACATTCCAGTTTGATTTGCAAAATACATTGCAGAAGCTTCCAAACAATATCTTTGAAAAGAGTT ACCCTCTTAGAGAATTTGACTTGCAGAAGAGAATCCACTCGTTCTTCTATAAGGCTGCAGAGTTATGTATGGTTGGATTAACTGCTGGGGCAATGCAAGG TTCCTTGACAAATCTTTTGGCCCGTAAAAAGGATAGGTTATCTGTGACAATCCCACCCGTGAGTACCTATGCTCTTGGTTATGGTGCTTTCCTTGGACTT TATGCAAACCTGAGATACCAGCTATTATGTGGAATTGATAGAGCAGTGGTCAATCATTTTGATGTCATTGGAGTGGCATTGGTTTTCAGCACAGCTTTGA GGATTTTAAATGCCCAAGTAGGAGAGACATCAAGGCTAGCTTGGCTAGGGTTAGAGCCAGATCCTTTGGTTCAGTCAGATGACCTTTTGAAGGCTTACAA CAGGTCGTCTTCAGGGGATGCTACCGAGTCATCTTCTAAATGGTTTATCTCTAAGAAAGCTCTAGTTTCCGGGCTCGGGCTCCTTGGCATAAAGCAAGGC AATGCTGATTCCATTATCGGGGAATCACCAGCGCCAAAGGTCCGTAGAAAGAGGGTTGTGCGGAAGAAGGTGTCTGCAAGTGAAGCCTAA
AA sequence Show only first row Show all	>Potri.003G019600.1 pacid=42786970 polypeptide=Potri.003G019600.1.p locus=Potri.003G019600 ID=Potri.003G019600.1.v4.1 annot-version=v4.1 MPHFVLQTAQIPTPTTKTTLSLKPTFPIPQLCHLRRRVRSNRNLDLKCSSSSSSSSSSCPMIDGGGDSVAALERCFSAPPAPVVGDFGPVMKGKFGSLGA VTLEKGKLDMSQKQSQSTPEVALGGGGGDIGKHINHGGGDGGDDDGDDDDYFDDFDDGDEGDEGGLFRRRIFLEELYDRKFVDAVLNEWHKTMMDLPAGF RQAYEMGLVSSAQMVKFLAINARPTTTRFISRALPQAISRAFIGRMIADPAFLYRLLLEQAATVGCSVWWELKNRKDRIKQEWDLALINVLTVTACNALV VWSLAPCRSYGNTFQFDLQNTLQKLPNNIFEKSYPLREFDLQKRIHSFFYKAAELCMVGLTAGAMQGSLTNLLARKKDRLSVTIPPVSTYALGYGAFLGL YANLRYQLLCGIDRAVVNHFDVIGVALVFSTALRILNAQVGETSRLAWLGLEPDPLVQSDDLLKAYNRSSSGDATESSSKWFISKKALVSGLGLLGIKQG NADSIIGESPAPKVRRKRVVRKKVSASEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24690			Protein of unknown function (D...		Potri.003G019600 [exp]	0	1
AT2G15820		OTP51	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.009G106800 [exp]	2.64	0.9319
AT3G09650		CRM3, HCF152	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.016G085300 [exp]	3.00	0.9506
AT2G45680	TCP	TCP9	TCP family transcription facto...		Potri.001G111800 [exp]	3.46	0.9416
AT5G22510		INV-E, At-A/N-I...	Arabidopsis alkaline/neutral i...		Potri.004G186500 [exp]	4.89	0.9324
AT1G36390			Co-chaperone GrpE family prote...		Potri.002G090000 [exp]	5.19	0.9087
AT1G62680			Pentatricopeptide repeat (PPR)...		Potri.016G136700 [exp]	6.78	0.9458
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.013G058900 [exp]	7.74	0.9161
AT3G25470			bacterial hemolysin-related (....		Potri.014G175500 [exp]	9.48	0.9271
					Potri.001G205966 [exp]	13.11	0.9021
AT3G22150			Tetratricopeptide repeat (TPR)...		Potri.006G007800 [exp]	13.96	0.9348

Compare expression of checked genes

Potri.003G019600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.