Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06470 314 / 3e-108 GNS1/SUR4 membrane protein family (.1) AT3G06460 278 / 2e-93 GNS1/SUR4 membrane protein family (.1) AT1G75000 114 / 5e-30 GNS1/SUR4 membrane protein family (.1) AT4G36830 102 / 2e-25 HOS3-1 GNS1/SUR4 membrane protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G019800 [exp] 307 / 3e-105 AT3G06470 280 / 2e-94 GNS1/SUR4 membrane protein family (.1) Potri.014G040500 [exp] 121 / 1e-32 AT4G36830 323 / 5e-111 GNS1/SUR4 membrane protein family (.1) Potri.007G031500 [exp] 117 / 6e-31 AT4G36830 368 / 6e-129 GNS1/SUR4 membrane protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030547 [exp] 298 / 1e-101 AT3G06470 330 / 1e-114 GNS1/SUR4 membrane protein family (.1) Lus10012894 [exp] 252 / 9e-84 AT3G06470 298 / 5e-102 GNS1/SUR4 membrane protein family (.1) Lus10020825 [exp] 234 / 3e-75 AT3G06460 260 / 5e-85 GNS1/SUR4 membrane protein family (.1) Lus10012685 [exp] 233 / 2e-74 AT3G06470 259 / 3e-84 GNS1/SUR4 membrane protein family (.1) Lus10022493 [exp] 124 / 1e-33 AT4G36830 374 / 7e-131 GNS1/SUR4 membrane protein family (.1) Lus10020972 [exp] 108 / 6e-30 AT3G06470 100 / 2e-27 GNS1/SUR4 membrane protein family (.1) Lus10016797 [exp] 95 / 3e-23 AT4G36830 296 / 2e-101 GNS1/SUR4 membrane protein family (.1) Lus10018795 [exp] 67 / 7e-14 AT4G36830 157 / 1e-48 GNS1/SUR4 membrane protein family (.1) Lus10018796 [exp] 44 / 3e-05 AT4G36830 172 / 7e-54 GNS1/SUR4 membrane protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01151 [poplar] [flax] ELO GNS1/SUR4 family
Representative CDS sequence Show only first row Show all	>Potri.003G019700.1 pacid=42786761 polypeptide=Potri.003G019700.1.p locus=Potri.003G019700 ID=Potri.003G019700.1.v4.1 annot-version=v4.1 ATGAATCCAATACTCTCTACCCTTCAGTACTGGCTAGTGAACCACCCAAAAATCCTGCACTTTTCCTGGACCCCAGGCCAAACCTTTGGCTCCTCCTACC AGTTCCTCGCCCTCACAGTTGCCGCCTACCTCTTCCTCACATTCCTTCTCTCCCGAATCCCTCTCCCTTCTTCCCTCCGAAGACCTCACATCCTCAAACC AATCACAGCCCTCCACAGCTTCGTCCTGTTCCTTCTCTCCTTCATCATGGCCCTTGGCTGCACCCTCTCCATCATCTCCCCCACCGCCCGCCCTCACTTC CACCACATCATTTGCTTCCCTCCCCACACCCCTCAATCTGGGCCTCTCTTTTTCTGGGCCTACGTATTCTACCTCTCCAAGATTCTTGAATTTGTCGACA CCCTTTTGATCATCTTGAGCAATTCGATCCAACGCCTGACATTCCTCCACGTCTACCACCACGCAACGGTGGTGGTCATGTGCTACTTGTGGCTCATGAC TTCACAGTCATTGTTTCCAGTGGCCTTAATCACCAATTCTTTGGTACATATGGTAATGTACTACTACTACCTGTGGAGTGCAATGGGTGTGAGGCCAAAG TGGAAAAGACTGGTCACTGATTGCCAGATTGTGCAGTTTGTTTTTAGCTTTGCCATATCGGGCTTGATGCTGTACTACCATTTTACAGGATCAGGTTGCT CAGGAATCTGGGGTTGGTGCTTCAATGCTGTTTTCAATGCTTCACTCTTGGCTCTTTTTCTTGATTTTCATGGTAAGAGCTATGCCAACAAAAAGGCAGC TGCTCATAAAGATAAAGGGCTATGA
AA sequence Show only first row Show all	>Potri.003G019700.1 pacid=42786761 polypeptide=Potri.003G019700.1.p locus=Potri.003G019700 ID=Potri.003G019700.1.v4.1 annot-version=v4.1 MNPILSTLQYWLVNHPKILHFSWTPGQTFGSSYQFLALTVAAYLFLTFLLSRIPLPSSLRRPHILKPITALHSFVLFLLSFIMALGCTLSIISPTARPHF HHIICFPPHTPQSGPLFFWAYVFYLSKILEFVDTLLIILSNSIQRLTFLHVYHHATVVVMCYLWLMTSQSLFPVALITNSLVHMVMYYYYLWSAMGVRPK WKRLVTDCQIVQFVFSFAISGLMLYYHFTGSGCSGIWGWCFNAVFNASLLALFLDFHGKSYANKKAAAHKDKGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06470			GNS1/SUR4 membrane protein fam...		Potri.003G019700 [exp]	0	1
AT2G14880			SWIB/MDM2 domain superfamily p...		Potri.009G092200 [exp]	4.89	0.7980
AT2G21170		PDTPI, TIM	PLASTID ISOFORM TRIOSE PHOSPHA...		Potri.009G129500 [exp]	6.32	0.7836	TIM.2
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Potri.016G121200 [exp]	28.28	0.6999
AT3G47590			alpha/beta-Hydrolases superfam...		Potri.018G068000 [exp]	52.65	0.7340
AT4G11120			translation elongation factor ...		Potri.014G172300 [exp]	99.13	0.7223

Compare expression of checked genes

Potri.003G019700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.