Plant FIBer expression Database

Potri.003G019800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G06470 280 / 2e-94 GNS1/SUR4 membrane protein family (.1)
AT3G06460 263 / 1e-87 GNS1/SUR4 membrane protein family (.1)
AT4G36830 77 / 4e-16 HOS3-1 GNS1/SUR4 membrane protein family (.1)
AT1G75000 74 / 5e-15 GNS1/SUR4 membrane protein family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G019700
[exp]
296 / 5e-101 AT3G06470 315 / 2e-108 GNS1/SUR4 membrane protein family (.1)
Potri.014G040500
[exp]
86 / 4e-19 AT4G36830 323 / 5e-111 GNS1/SUR4 membrane protein family (.1)
Potri.007G031500
[exp]
81 / 9e-18 AT4G36830 368 / 6e-129 GNS1/SUR4 membrane protein family (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020825
[exp]
306 / 5e-103 AT3G06460 260 / 5e-85 GNS1/SUR4 membrane protein family (.1)
Lus10012685
[exp]
299 / 4e-100 AT3G06470 259 / 3e-84 GNS1/SUR4 membrane protein family (.1)
Lus10030547
[exp]
226 / 2e-73 AT3G06470 330 / 1e-114 GNS1/SUR4 membrane protein family (.1)
Lus10012894
[exp]
196 / 1e-61 AT3G06470 298 / 5e-102 GNS1/SUR4 membrane protein family (.1)
Lus10020972
[exp]
129 / 8e-38 AT3G06470 100 / 2e-27 GNS1/SUR4 membrane protein family (.1)
Lus10022493
[exp]
94 / 5e-22 AT4G36830 374 / 7e-131 GNS1/SUR4 membrane protein family (.1)
Lus10016797
[exp]
88 / 1e-20 AT4G36830 296 / 2e-101 GNS1/SUR4 membrane protein family (.1)
Lus10018795
[exp]
50 / 2e-07 AT4G36830 157 / 1e-48 GNS1/SUR4 membrane protein family (.1)
Lus10018796
[exp]
44 / 5e-05 AT4G36830 172 / 7e-54 GNS1/SUR4 membrane protein family (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01151 ELO GNS1/SUR4 family
Representative CDS sequence
>Potri.003G019800.3 pacid=42786357 polypeptide=Potri.003G019800.3.p locus=Potri.003G019800 ID=Potri.003G019800.3.v4.1 annot-version=v4.1
ATGGAATTCCTTTTCCAAACAGTTAAACACTGTGTTATGAACCATCTAGCCAAGAAGCCAGTTTTCTCGACCCTCCAATACTGGCTTGTGAACAACCCTC
ATATCCTCAACTTTTCATGGAACCAAGGCCAGACACTAGGAGCCTCTCCACTCTTCCTCACCCTCACTGTCCTCTCCTATCTCTCCCTTACTTTCATCCT
TTCACATGTCACTCTCCCCTCAGTTGGGCCTCGCATCCTCAGGTTTCTCACAGCCATTCATAACATTATCCTCCTCACTGTCTCCTTCACCATGGCCATC
GGTTGCACCCTCTCCATTATTTTCCACTCACCTAATGTGGACTGCATCGTTTGTTACCCTATAAACACCCCACCAAGAGGGCCTCTCTTCTTCTGGTCGC
ATATTTTCTATCTCTCAAAGATTTTTGAATTCATGGACACCCTCTTGATCATCTTGAGCAACTCCATCAGAAGGCTGACTTTTCTCCACGTGTATCACCA
TGCAACCGTTGTGGTCATGTGTTACATATCTTTACACACTTCACAGTCTTTGTTTCCTGGGGTGATTGTCATAAACTCTTCGGTGCACGTGATAATGTAT
TTCTACTACTTCCTGTGTTCATTAGGGATACGTCCCAAGTGGAAAAAGTTTGTCACAGATTGCCAGATTGTGCAGTTCTTTTCAAGCTTTGGGATCATGG
CCTGGATTTTTTACTACCATTTCACAGGGTTGGGCTGCTCTGGCATCTGGGGTTGGTGCTTTGATTCTGTTTTCATCACTTCTCTTTTGGTTTTGTTCCT
TGATTTCCATTCAAAGAATTACTCCAACAAAAACGAGGCAAAGAAGAATATATAA
AA sequence
>Potri.003G019800.3 pacid=42786357 polypeptide=Potri.003G019800.3.p locus=Potri.003G019800 ID=Potri.003G019800.3.v4.1 annot-version=v4.1
MEFLFQTVKHCVMNHLAKKPVFSTLQYWLVNNPHILNFSWNQGQTLGASPLFLTLTVLSYLSLTFILSHVTLPSVGPRILRFLTAIHNIILLTVSFTMAI
GCTLSIIFHSPNVDCIVCYPINTPPRGPLFFWSHIFYLSKIFEFMDTLLIILSNSIRRLTFLHVYHHATVVVMCYISLHTSQSLFPGVIVINSSVHVIMY
FYYFLCSLGIRPKWKKFVTDCQIVQFFSSFGIMAWIFYYHFTGLGCSGIWGWCFDSVFITSLLVLFLDFHSKNYSNKNEAKKNI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G06470 GNS1/SUR4 membrane protein fam... Potri.003G019800
[exp]
0 1
AT1G11600 CYP77B1 "cytochrome P450, family 77, s... Potri.004G018800
[exp]
1.00 0.9776 Pt-CYP77.2
AT5G04470 SIM SIAMESE, cyclin-dependent prot... Potri.010G231700
[exp]
2.44 0.9701
AT2G45260 Plant protein of unknown funct... Potri.013G155400
[exp]
9.16 0.9629
AT1G71691 GDSL-like Lipase/Acylhydrolase... Potri.013G102500
[exp]
11.83 0.9654
AT3G50390 Transducin/WD40 repeat-like su... Potri.006G239600
[exp]
12.96 0.9609
AT3G11480 BSMT1, ATBSMT1 S-adenosyl-L-methionine-depend... Potri.019G022400
[exp]
14.21 0.9718
AT1G73680 ALPHADOX2 ,ALPH... alpha dioxygenase (.1.2) Potri.012G049500
[exp]
15.49 0.9652
AT5G09970 CYP78A7 "cytochrome P450, family 78, s... Potri.002G060900
[exp]
15.87 0.9600
AT5G62360 Plant invertase/pectin methyle... Potri.015G128100
[exp]
17.49 0.9537
Potri.004G182966
[exp]
19.94 0.8781

Potri.003G019800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.