Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17540 409 / 4e-140 HXXXD-type acyl-transferase family protein (.1) AT3G03480 385 / 1e-130 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT5G41040 250 / 2e-78 HXXXD-type acyl-transferase family protein (.1.2) AT3G48720 234 / 2e-72 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G63560 233 / 5e-72 HXXXD-type acyl-transferase family protein (.1) AT1G27620 206 / 2e-61 HXXXD-type acyl-transferase family protein (.1) AT1G03390 187 / 4e-54 HXXXD-type acyl-transferase family protein (.1) AT5G48930 171 / 2e-48 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT2G40230 160 / 2e-44 HXXXD-type acyl-transferase family protein (.1) AT3G62160 159 / 7e-44 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G112100 [exp] 599 / 0 AT5G17540 378 / 7e-128 HXXXD-type acyl-transferase family protein (.1) Potri.001G127400 [exp] 535 / 0 AT5G17540 410 / 3e-140 HXXXD-type acyl-transferase family protein (.1) Potri.001G127600 [exp] 531 / 0 AT5G17540 406 / 1e-138 HXXXD-type acyl-transferase family protein (.1) Potri.019G043600 [exp] 526 / 0 AT5G17540 545 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074500 [exp] 521 / 0 AT5G17540 547 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.019G002900 [exp] 494 / 1e-173 AT5G17540 481 / 5e-168 HXXXD-type acyl-transferase family protein (.1) Potri.019G003000 [exp] 493 / 6e-173 AT5G17540 480 / 9e-168 HXXXD-type acyl-transferase family protein (.1) Potri.013G074400 [exp] 491 / 2e-172 AT5G17540 518 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074300 [exp] 491 / 2e-172 AT5G17540 497 / 7e-175 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020331 [exp] 479 / 2e-167 AT5G17540 504 / 4e-177 HXXXD-type acyl-transferase family protein (.1) Lus10020332 [exp] 470 / 1e-163 AT5G17540 464 / 3e-161 HXXXD-type acyl-transferase family protein (.1) Lus10005660 [exp] 439 / 2e-151 AT5G17540 461 / 4e-160 HXXXD-type acyl-transferase family protein (.1) Lus10020330 [exp] 420 / 4e-144 AT5G17540 436 / 2e-150 HXXXD-type acyl-transferase family protein (.1) Lus10005659 [exp] 412 / 4e-141 AT5G17540 406 / 6e-139 HXXXD-type acyl-transferase family protein (.1) Lus10005661 [exp] 396 / 1e-135 AT5G17540 412 / 7e-142 HXXXD-type acyl-transferase family protein (.1) Lus10026872 [exp] 358 / 3e-122 AT5G17540 341 / 2e-115 HXXXD-type acyl-transferase family protein (.1) Lus10005663 [exp] 282 / 5e-93 AT5G17540 295 / 4e-98 HXXXD-type acyl-transferase family protein (.1) Lus10012552 [exp] 251 / 8e-79 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10043189 [exp] 248 / 2e-77 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.003G019900.1 pacid=42784485 polypeptide=Potri.003G019900.1.p locus=Potri.003G019900 ID=Potri.003G019900.1.v4.1 annot-version=v4.1 ATGGCATCATCCTCGTCGTCTCCACTAAGATTTTCAGTCAAACGTCGTGAGCCACAGCTAATTGTGCCATCAAAACCAACACCTCATGAAATAAAACAAC TCTCAGATATAGATGACCAGCAAGGTCTTCGTTTCCATTTGCCTTTTGTAATGTTCTATCGTAGCCATCCTTCCATGAAAAGAGAAGACCCTGTGAAGGT TATCAAAGAGGCATTAGGCAAAGCACTTGTGTTTTACTACCCCTTTGCCGGTAGGATTATAGAAGGGCCTCGTAGCAAACTTCTAGTTGATTGTACCGGC GAAGGGATCTTGTTTGTTGAAGCTGATGCAGGTGTAACGATTGACCAACTAGGTGACAGCATACACCCTCCTTTTTCTTATATTGAAGAATTCCTGCATG ATGTTCCTGGATCTTCAGGTATTCTTGGATGCCCGTTGCTGTTGATTCAGGTGACTCGTTTGGCTTGTGGGGGATTCATCTTTGCAATACGCCTAAACCA CACTATGAGTGATTCGCTTGGGTTGTCAAAATTCTTGAACACAGTTGGAGAATTGGCACTAGGAGCAAGCACACCATCCCTATTGCCTGTGTGGGAAAGA GAGATCTTGAATGCAAGAAACCCACCTCGAGTGACTTGTGTGCACCATGAGTACGAGCAGCTAACACACACAGAAACCTCCATAGTCATGACTTTGCAGG AGCATGAGAAATATATGGCCCATCGCTCTTTCTTTTTTGGCCCTAGTGAATTGAAATCAATAAGAAAGCACATTCCACCCCACCTTCAAAAATGCTCAAA CTTTGAGGTGCTGGCTTCATTTTTATGGAGATCTCGGACAATTGCTCTTCAACTTGACCCCGAGGAGGTTGTTCGTTTATCAGTCATGATCAACGTACGT GGAAAGCAAGGCCTAAAAGTTCCTAGTGGATACTATGGCAATGCTTTTGCTTACCCAACTGCCATTTCAAAGGCTGGACTCTTGTGTCAGAGCCCATTGG GATATGCACTTGAGCTGGTGAGGAGACTGAAGACCCAGATGAATGAAGAATACATTAAATCAGCTGCAGACCTCATGGTGTTAAAAGGGAGACCACATTA TACGACAGTTTGGAGCTTCCTTATTGCTGATGCAACTCGTGTTGGACTTGGAGATATTGATTTTGGATGGGGAAAGGCTGTTTATGGGGGTCCAATTGGA GCTCCACCTTGTACTAGCTTCCATGTCAGTGGATTAAAAAATAGTTATGGGGAGGAGGGTATTTTAGTACCTATATTGCTGCCATTGCCAATCATGAATA GATTTCAACAAGAGCTCCTGAGCAATGGCATTGAGTACCCAAGAAAAATCGCACCTAGGCTTTAG
AA sequence Show only first row Show all	>Potri.003G019900.1 pacid=42784485 polypeptide=Potri.003G019900.1.p locus=Potri.003G019900 ID=Potri.003G019900.1.v4.1 annot-version=v4.1 MASSSSSPLRFSVKRREPQLIVPSKPTPHEIKQLSDIDDQQGLRFHLPFVMFYRSHPSMKREDPVKVIKEALGKALVFYYPFAGRIIEGPRSKLLVDCTG EGILFVEADAGVTIDQLGDSIHPPFSYIEEFLHDVPGSSGILGCPLLLIQVTRLACGGFIFAIRLNHTMSDSLGLSKFLNTVGELALGASTPSLLPVWER EILNARNPPRVTCVHHEYEQLTHTETSIVMTLQEHEKYMAHRSFFFGPSELKSIRKHIPPHLQKCSNFEVLASFLWRSRTIALQLDPEEVVRLSVMINVR GKQGLKVPSGYYGNAFAYPTAISKAGLLCQSPLGYALELVRRLKTQMNEEYIKSAADLMVLKGRPHYTTVWSFLIADATRVGLGDIDFGWGKAVYGGPIG APPCTSFHVSGLKNSYGEEGILVPILLPLPIMNRFQQELLSNGIEYPRKIAPRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.003G019900 [exp]	0	1
AT2G38540		ATLTP1, LP1	ARABIDOPSIS THALIANA LIPID TRA...		Potri.004G086600 [exp]	1.00	0.9925	Pt-MALD3.1
AT1G12570			Glucose-methanol-choline (GMC)...		Potri.001G111500 [exp]	4.89	0.9925
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Potri.010G032800 [exp]	5.91	0.9873
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Potri.003G172400 [exp]	7.14	0.9893
AT1G55230			Family of unknown function (DU...		Potri.001G009000 [exp]	7.74	0.9859
AT5G65940		CHY1	beta-hydroxyisobutyryl-CoA hyd...		Potri.018G004200 [exp]	10.95	0.9834
AT5G18080		SAUR24	small auxin up RNA 24, SAUR-li...		Potri.009G127100 [exp]	14.07	0.9849
AT2G18969			unknown protein		Potri.018G090200 [exp]	14.14	0.9848
AT2G10940			Bifunctional inhibitor/lipid-t...		Potri.006G065500 [exp]	15.19	0.9857
AT3G05470			Actin-binding FH2 (formin homo...		Potri.005G026300 [exp]	15.49	0.9857

Compare expression of checked genes

Potri.003G019900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.