Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77700 273 / 1e-90 Pathogenesis-related thaumatin superfamily protein (.1) AT1G19320 201 / 1e-63 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75050 200 / 2e-63 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75030 195 / 2e-61 ATLP-3 thaumatin-like protein 3 (.1) AT1G75040 192 / 1e-60 PR-5, PR5 pathogenesis-related gene 5 (.1) AT1G73620 192 / 6e-60 Pathogenesis-related thaumatin superfamily protein (.1) AT1G18250 191 / 8e-60 ATLP-1 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G38660 194 / 1e-59 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G20030 185 / 1e-56 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G24180 183 / 1e-56 ATTLP1 THAUMATIN-LIKE PROTEIN 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G210400 [exp] 427 / 4e-152 AT1G77700 273 / 1e-90 Pathogenesis-related thaumatin superfamily protein (.1) Potri.002G087100 [exp] 315 / 4e-108 AT1G77700 384 / 2e-134 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G173900 [exp] 306 / 2e-104 AT1G77700 316 / 2e-107 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G241000 [exp] 206 / 2e-64 AT4G24180 348 / 5e-121 THAUMATIN-LIKE PROTEIN 1 (.1) Potri.002G020400 [exp] 199 / 3e-62 AT4G38660 357 / 2e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G112700 [exp] 194 / 1e-60 AT4G36010 372 / 3e-130 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.006G088100 [exp] 193 / 1e-60 AT5G02140 375 / 4e-132 Pathogenesis-related thaumatin superfamily protein (.1) Potri.014G040700 [exp] 191 / 1e-59 AT1G75030 342 / 5e-120 thaumatin-like protein 3 (.1) Potri.015G039200 [exp] 190 / 2e-59 AT1G73620 352 / 1e-123 Pathogenesis-related thaumatin superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025629 [exp] 265 / 4e-87 AT1G77700 377 / 4e-130 Pathogenesis-related thaumatin superfamily protein (.1) Lus10013561 [exp] 201 / 8e-63 AT4G38660 326 / 2e-112 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10003962 [exp] 198 / 2e-62 AT5G02140 387 / 4e-137 Pathogenesis-related thaumatin superfamily protein (.1) Lus10017266 [exp] 195 / 2e-60 AT4G24180 322 / 7e-111 THAUMATIN-LIKE PROTEIN 1 (.1) Lus10028448 [exp] 194 / 2e-60 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10032726 [exp] 192 / 5e-60 AT1G75030 334 / 5e-117 thaumatin-like protein 3 (.1) Lus10023785 [exp] 192 / 1e-59 AT5G02140 379 / 2e-133 Pathogenesis-related thaumatin superfamily protein (.1) Lus10009058 [exp] 190 / 2e-59 AT1G73620 376 / 2e-133 Pathogenesis-related thaumatin superfamily protein (.1) Lus10028447 [exp] 189 / 4e-58 AT4G38660 359 / 4e-124 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041899 [exp] 189 / 8e-58 AT4G38660 363 / 2e-125 Pathogenesis-related thaumatin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [poplar] [flax] CDC PF00314 [poplar] [flax] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Potri.003G020100.1 pacid=42786411 polypeptide=Potri.003G020100.1.p locus=Potri.003G020100 ID=Potri.003G020100.1.v4.1 annot-version=v4.1 ATGGCTCAAATCCTAGGTCGCCATCTTCATCTGTTCATGCCCTTGTCTGTGCTCATTCTCCAGATCGCCATGGCAGCAGGACAAAACACGTCCGCAGAGG CAAAAAGTTTTACGTTAGTTAATAACTGCAACGAGACAATATGGCCTGGAATCCTAACAAGGGGTAACAACAGCAATGGCTATGGTTTTGCTCTACAACA AGGCCAAACCGCCTTCTACAACGCCACGGCCGGATGGAGTGGCCGGATGTGGGCACGAACCGGTTGCAGTTTTGATAAAAACGGCACTGGAACTTGTCAA ACAGGTAGCTGTGGCACCTCTATAAACTGCACAGTCCCGAGTAACCCACCCAACACCATTGCCGAGTTCACTCTTGGTGATGTTGATTTCTACGATGTTA GCCTTGTCGATGGATTTAATTTGCCTGTAGTAATTTCTCCTATTGATGGCAAGGGAAATTGTAGCATTTCTGGTTGTGATGGGGACCTCCGACAAAATTG CTCGTCCGGACTGGCTGTTAAGTCCGACGGGAAGGTCATTGCTTGCCGGAGCGCATGTGATGCTTTCAACACCGACGAATACTGTTGTAGAGGAGCATAT GCCGATCCTGTAGCATGTCTGCCAACCAACTATTCCAGGAGTTTTAAACAAGTCTGTCCTGCAGCAGCTAGTTATGCATTTGATGACAGTATAAGCATCA TAACATGCTCTGCCTCAGAATACGTTGTCACCTTCTGCGCCTCAAGGAATCAAAAGGTGTGCTCTTATCATGATAACAAGCTTGTCTGCAATACATCGAA TGGTTCAAAAGCATCTCCCCTTGGCCTAGGAGGATGGATTCTGGTGTTGGCACTGCCTTTGACATATAATTTGAAGATGAAATTCTATCTCAGCTGA
AA sequence Show only first row Show all	>Potri.003G020100.1 pacid=42786411 polypeptide=Potri.003G020100.1.p locus=Potri.003G020100 ID=Potri.003G020100.1.v4.1 annot-version=v4.1 MAQILGRHLHLFMPLSVLILQIAMAAGQNTSAEAKSFTLVNNCNETIWPGILTRGNNSNGYGFALQQGQTAFYNATAGWSGRMWARTGCSFDKNGTGTCQ TGSCGTSINCTVPSNPPNTIAEFTLGDVDFYDVSLVDGFNLPVVISPIDGKGNCSISGCDGDLRQNCSSGLAVKSDGKVIACRSACDAFNTDEYCCRGAY ADPVACLPTNYSRSFKQVCPAAASYAFDDSISIITCSASEYVVTFCASRNQKVCSYHDNKLVCNTSNGSKASPLGLGGWILVLALPLTYNLKMKFYLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77700			Pathogenesis-related thaumatin...		Potri.003G020100 [exp]	0	1
AT1G68640	bZIP	PAN	PERIANTHIA, bZIP transcription...		Potri.010G128001 [exp]	2.44	0.7910
AT2G28000		Cpn60alpha1, SL...	SCHLEPPERLESS, chaperonin-60al...		Potri.009G009300 [exp]	6.08	0.7994	SLP.1
AT2G01220			Nucleotidylyl transferase supe...		Potri.010G120200 [exp]	7.34	0.7731
AT3G13470		Cpn60beta2	chaperonin-60beta2, TCP-1/cpn6...		Potri.003G222400 [exp]	13.07	0.7898	Pt-LEN1.1
AT4G15850		ATRH1	RNA helicase 1 (.1)		Potri.004G158000 [exp]	21.90	0.7536	ATRH1.1
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.003G013601 [exp]	24.59	0.7008
AT2G02710		PLPC, PLPB, PLP...	PAS/LOV PROTEIN C, PAS/LOV PRO...		Potri.010G053500 [exp]	25.37	0.7194
					Potri.010G111100 [exp]	33.98	0.7621
AT1G13310			Endosomal targeting BRO1-like ...		Potri.010G128700 [exp]	36.76	0.7188
AT2G34440	MADS	AGL29	AGAMOUS-like 29 (.1)		Potri.004G131100 [exp]	38.94	0.7109

Compare expression of checked genes

Potri.003G020100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.