Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10160 310 / 5e-108 Thioesterase superfamily protein (.1) AT2G22230 303 / 3e-105 Thioesterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G209900 [exp] 165 / 1e-52 AT5G10160 157 / 2e-50 Thioesterase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015830 [exp] 332 / 2e-116 AT5G10160 309 / 9e-108 Thioesterase superfamily protein (.1) Lus10020419 [exp] 322 / 1e-112 AT5G10160 307 / 7e-107 Thioesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [poplar] [flax] HotDog PF01575 [poplar] [flax] MaoC_dehydratas MaoC like domain
Representative CDS sequence Show only first row Show all	>Potri.003G020300.2 pacid=42785872 polypeptide=Potri.003G020300.2.p locus=Potri.003G020300 ID=Potri.003G020300.2.v4.1 annot-version=v4.1 ATGGCAACCTCGGCGTTCGCCAACTCACTTCTTTCTTCTTCAACATCTCTCGCTCATGGAGTTTTACCCTCTAATAACAACAATTTCTTGCTTCCATCTC GGGTTTCGGTCTCCAATCCCAGATCTCAGAATCCGCTGCTCTCAGCCCATTTCAAGCTGAAGGACAAAACCAATTCTAGCTCTCTCATTACCTTTTGCTC TCTTGGTGCTGCTGCTGCTAATGATCCAAAAGAAGAGCAGATTCCCATTGAACTCAAGTATCCTGCGTATCCCACTGTGATGGACATCAACCAGATTCGT GAGATTCTACCTCACAGGTTCCCATTTCTGTTGGTGGATAGAGTAATTGAGTACAATCCTGGAGTTTCAGCTGTTGCCATCAAGAATGTGACGATTAATG ACAATTTCTTCCCTGGTCATTTTCCAGAGAGGCCCATTATGCCTGGTGTTCTTATGGTTGAGGCGTTGGCACAAGTTGGTGGTTTAGTCATGCTGCAACC AGAAGTTGGAGGTTCTCGTGAGAATTTCTTCTTTGCTGGAATTGACAAAGTGAGATTCCGGAAACCAGTGATTGCGGGTGACACCTTGGTTATGAGAATG ACACTAATCAAGCTGCAGAAACGCTTCGGAATAGCAAAGATGGAGGGGAAAGCTTATGTTGGAGGTGAGGTAGTATGCGAGGGCGAGTTTTTGATGGCTA CTGGTGGTGAATAA
AA sequence Show only first row Show all	>Potri.003G020300.2 pacid=42785872 polypeptide=Potri.003G020300.2.p locus=Potri.003G020300 ID=Potri.003G020300.2.v4.1 annot-version=v4.1 MATSAFANSLLSSSTSLAHGVLPSNNNNFLLPSRVSVSNPRSQNPLLSAHFKLKDKTNSSSLITFCSLGAAAANDPKEEQIPIELKYPAYPTVMDINQIR EILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEALAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRM TLIKLQKRFGIAKMEGKAYVGGEVVCEGEFLMATGGE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10160			Thioesterase superfamily prote...		Potri.003G020300 [exp]	0	1
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Potri.004G131500 [exp]	2.00	0.8638	I.2
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Potri.009G062200 [exp]	2.64	0.8827	Pt-ANT2.1
AT1G22520			Domain of unknown function (DU...		Potri.013G105766 [exp]	2.82	0.8394
AT4G30320			CAP (Cysteine-rich secretory p...		Potri.006G171300 [exp]	4.47	0.8358
AT2G34590			Transketolase family protein (...		Potri.017G076500 [exp]	4.69	0.7992	PDH.1
AT3G56130			biotin/lipoyl attachment domai...		Potri.008G074100 [exp]	6.00	0.8335
AT5G39240			unknown protein		Potri.017G093000 [exp]	7.41	0.8219
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Potri.010G126600 [exp]	7.93	0.8321
AT1G34430		EMB3003	embryo defective 3003, 2-oxoac...		Potri.013G114300 [exp]	9.79	0.8298
AT1G24620			EF hand calcium-binding protei...		Potri.010G107100 [exp]	9.89	0.8192

Compare expression of checked genes

Potri.003G020300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.