Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36570 298 / 2e-91 Leucine-rich repeat protein kinase family protein (.1) AT2G26730 268 / 1e-80 Leucine-rich repeat protein kinase family protein (.1) AT5G05160 257 / 2e-76 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT5G58300 256 / 3e-76 Leucine-rich repeat protein kinase family protein (.1.2) AT1G48480 248 / 6e-73 RKL1 receptor-like kinase 1 (.1) AT4G23740 246 / 2e-72 Leucine-rich repeat protein kinase family protein (.1) AT3G17840 246 / 3e-72 RLK902 receptor-like kinase 902 (.1) AT4G31250 245 / 1e-71 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 238 / 4e-69 leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G60630 235 / 3e-68 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G074300 [exp] 290 / 1e-88 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G062100 [exp] 275 / 2e-82 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G131500 [exp] 269 / 4e-81 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G158800 [exp] 261 / 4e-78 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.006G117200 [exp] 262 / 5e-78 AT2G36570 806 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G044600 [exp] 261 / 7e-78 AT1G48480 719 / 0.0 receptor-like kinase 1 (.1) Potri.015G035500 [exp] 256 / 4e-76 AT1G48480 731 / 0.0 receptor-like kinase 1 (.1) Potri.016G139200 [exp] 254 / 2e-75 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G209700 [exp] 235 / 7e-74 AT5G05160 127 / 2e-34 REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019113 [exp] 291 / 2e-89 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021383 [exp] 283 / 5e-86 AT3G08680 667 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021673 [exp] 274 / 6e-83 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10025210 [exp] 273 / 2e-82 AT3G08680 669 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035012 [exp] 271 / 9e-82 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034446 [exp] 264 / 6e-79 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017756 [exp] 260 / 1e-77 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10002299 [exp] 246 / 6e-76 AT1G48480 433 / 5e-149 receptor-like kinase 1 (.1) Lus10017996 [exp] 249 / 2e-73 AT1G48480 772 / 0.0 receptor-like kinase 1 (.1) Lus10017178 [exp] 249 / 3e-73 AT2G36570 872 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.003G020600.1 pacid=42785381 polypeptide=Potri.003G020600.1.p locus=Potri.003G020600 ID=Potri.003G020600.1.v4.1 annot-version=v4.1 ATGGGATTTTCTACATTCCTGATCAAGCATCTGTATTGGCTTCTTTTGTTTACCTTCTTGATATTACACCTGACAGAAATTGGTACAGTAGCCCAGTTTG ATCCTTCACAGTACCCCGATATTCAAAGACAAGAAAGGGATGCTCTTTATGCTCTCAAGGCCAGATTCAACAACTCTTTTCTGAATGATAACTGGACTGG CCCTCAATGCAATACGGACTACTCGTCAAGTTGGCATGGCATTCAGTGCTTCAATGGTCGTGTAACTGAAATTTCTCTGGAAAGTATGAGGTTGAGTGTT ACATTAATGGATATCGATGCATTCGTCTTCCTCACCGAGCTGACGGTCCTGAGCCTGAAGAACAATTCAATATCAGGGAACATGATGAATTTCTCTTCCA ACAACAAGATGAAGCAACTTGATTTGTCAGGAAACAGGTTGTATGGTTCAATCCCAAAGTCACTACTAAGTCTTAAATTGTTGGAGTCTTTGCTTCTTCA GGATAACTATTTGACAGGGCCAATCCCAGAATTCAATCAATCCAGCTTGAGAGTCTTTAATGTCTCCAACAATGATCTCGATGGCTCGATCCCAAAAACT CACACTCTGCAATCTTTTGGCCCTGATTCATATTCTAGTAACCCTCAACTGTGTGGTCCGCCTACGCTCAACACCTGCAAAAATATCTTCGCAACAATAG ATGTAGCAGATGATCAGAACAAAGAAAGTTCTCCTGCTGAACACCCAAGAAAGTCATCTATACCTAACTCTGCAAAGATATCTGTAGTTTTCATCGCTGT TGGCTTCGTTGTGGCGATTTTTCTCTTCTTTCTTCACTTCAAGAAGGCTAGGAAGCTTAAGAAAAAGGGCAGGAAAGTTGAGGAAAGAGAAGAAGAAGAA GAACAGCAACCACAGCAACACCATGCTACTTTGATTGATGATGGTTTGGAGGGTGAGGAAAAACCTGTCAGGAGTATAGAGGAGGAAAAGGGAAAGGCTG TCGATATCGAAGAAGAAAAAAGGAGGCTTATTTTCATAGAGGAAGAAGCAAAAAGTTTCACACTGAATGATCTTTTAAAAGCTTCTGCTGAGGATTTAGG CAAGGGGAACTTTGGAGATTGTTATAAAGCTGTGATGGATGGCAAGGAAGCTGTTGTTGTAAAACGAATAAGGGATTTGAAGCCATTAAGTAGTAAAGAA TTCACAAGGCAATTGCACATAATTGCTCATCAGAAGCACCCCAATTTGCTACCACTTCTAGCTTACTACAACTCCAAGGATGAGAAGTTGCTGGTGTATA AATATGCAGAGAAAGGAAACCTCTTCAATCGCATTCATGGAAACAGGGGGAGGGACAGGATTCCATTTAGATGGAGCTCGAGAATATCAGTAGCTCTAGG CATTGCACGAGCCCTGGAATATCTTCACCTCAACACTATCTCACAAAGCATTGTCCCTCATGGCAACCTAAGATCAACGAATGTTCTTCTTGATTTGAAC GAAAAGGTTCTGGTATCAGATTATGGTCTCAGTTCAATAATAGCTCAACCCATTGCAGCTCAGCGTCTTGTGTCGTACAAATCACCTGAATATAAGACTA CCAAAAGGGTTTCCAAGAAATCTGATGTTTGGAGTTATGGTAGCCTTCTGTTAGAACTCTTGACTGCAAGGATATCAGTGTGCTCAGCTCCTCCAGGAAC CGACGGGATGGAGCTTTGCAGTTGGGTGAAAAAGGCAGTTAGGGAAGAATGGACAGCTGAGATATTTGATATTGAGATTGCTGCGCAGAGAAGTGCAAGT TCTGGGATGCTAGAACTACTGCAGATTGCTATCCGCTGCTGCGATAAGTCCCCTGAGAACCGACCTGAAATGACTGAGGTTGTGCGAGAGGTGGAGAGCA TCAAAGCTCTTGTTGAATCAGAAGATGAAGAAGACTTATCCATGGATCGATCGCTAACAGATGAATCTCTTTAA
AA sequence Show only first row Show all	>Potri.003G020600.1 pacid=42785381 polypeptide=Potri.003G020600.1.p locus=Potri.003G020600 ID=Potri.003G020600.1.v4.1 annot-version=v4.1 MGFSTFLIKHLYWLLLFTFLILHLTEIGTVAQFDPSQYPDIQRQERDALYALKARFNNSFLNDNWTGPQCNTDYSSSWHGIQCFNGRVTEISLESMRLSV TLMDIDAFVFLTELTVLSLKNNSISGNMMNFSSNNKMKQLDLSGNRLYGSIPKSLLSLKLLESLLLQDNYLTGPIPEFNQSSLRVFNVSNNDLDGSIPKT HTLQSFGPDSYSSNPQLCGPPTLNTCKNIFATIDVADDQNKESSPAEHPRKSSIPNSAKISVVFIAVGFVVAIFLFFLHFKKARKLKKKGRKVEEREEEE EQQPQQHHATLIDDGLEGEEKPVRSIEEEKGKAVDIEEEKRRLIFIEEEAKSFTLNDLLKASAEDLGKGNFGDCYKAVMDGKEAVVVKRIRDLKPLSSKE FTRQLHIIAHQKHPNLLPLLAYYNSKDEKLLVYKYAEKGNLFNRIHGNRGRDRIPFRWSSRISVALGIARALEYLHLNTISQSIVPHGNLRSTNVLLDLN EKVLVSDYGLSSIIAQPIAAQRLVSYKSPEYKTTKRVSKKSDVWSYGSLLLELLTARISVCSAPPGTDGMELCSWVKKAVREEWTAEIFDIEIAAQRSAS SGMLELLQIAIRCCDKSPENRPEMTEVVREVESIKALVESEDEEDLSMDRSLTDESL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36570			Leucine-rich repeat protein ki...		Potri.003G020600 [exp]	0	1
AT5G16330			NC domain-containing protein-r...		Potri.005G056300 [exp]	4.89	0.6615
AT1G53210			sodium/calcium exchanger famil...		Potri.004G052800 [exp]	11.13	0.6213
AT4G08690			Sec14p-like phosphatidylinosit...		Potri.005G168100 [exp]	15.49	0.5811
AT1G01280		CYP703A2	"cytochrome P450, family 703, ...		Potri.014G099600 [exp]	31.46	0.5059
AT1G64160			Disease resistance-responsive ...		Potri.001G096440 [exp]	37.69	0.5090
					Potri.017G069350 [exp]	41.41	0.4974
					Potri.001G305200 [exp]	41.56	0.4646
					Potri.018G036850 [exp]	51.11	0.4522
AT3G13220		MSR02, AtABCG26...	ATP-binding cassette G26, ABC-...		Potri.001G370600 [exp]	56.52	0.5628
AT3G20190			Leucine-rich repeat protein ki...		Potri.004G170274 [exp]	59.16	0.4697

Compare expression of checked genes

Potri.003G020600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.