Plant FIBer expression Database

Potri.003G020701 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.003G020701.1 pacid=42785889 polypeptide=Potri.003G020701.1.p locus=Potri.003G020701 ID=Potri.003G020701.1.v4.1 annot-version=v4.1
ATGTCTTCTCTTTGTAAACAATTTGTCCTCTCAAAAGCAATCAAGCATGCAAACCAGGCATCTTGCTTCCTGTTGGGACCTGGTCCACGACGTCTTCCCC
CATTGAGGATCCTTATTCAGAAGAAATGGATTGGGACAGGAGTGAGAAGGTCAGTTTCAGGGAGTTCCTCTCTTCTTCAAGGAAGCAGCACCCTCCTCAA
TGAATCTGAAGCAACAGACCTGAAAGACTTGGTCATTCTTTCTTATTTCTCAATTGAAAGAGAGGAGAGGAAAGGAGAAGCGAACTCGACCAGGTGGTTT
TTGTTTATTGATGAAATTTTCAATGAAAGCTGA
AA sequence
>Potri.003G020701.1 pacid=42785889 polypeptide=Potri.003G020701.1.p locus=Potri.003G020701 ID=Potri.003G020701.1.v4.1 annot-version=v4.1
MSSLCKQFVLSKAIKHANQASCFLLGPGPRRLPPLRILIQKKWIGTGVRRSVSGSSSLLQGSSTLLNESEATDLKDLVILSYFSIEREERKGEANSTRWF
LFIDEIFNES

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.003G020701
[exp]
0 1
AT1G10480 C2H2ZnF ZFP5 zinc finger protein 5 (.1) Potri.010G036400
[exp]
2.64 0.9352 Pt-ZFP5.2
AT4G37370 CYP81D8 "cytochrome P450, family 81, s... Potri.003G007000
[exp]
7.87 0.9231 IFS1.39
AT1G47340 F-box and associated interacti... Potri.008G216000
[exp]
16.73 0.9095
AT5G57620 MYB ATMYB36 myb domain protein 36 (.1) Potri.016G099200
[exp]
17.46 0.9066
AT5G58240 FHIT FRAGILE HISTIDINE TRIAD (.1.2) Potri.013G161100
[exp]
18.97 0.9024
AT5G49520 WRKY ATWRKY48, WRKY4... ARABIDOPSIS THALIANA WRKY DNA-... Potri.008G103300
[exp]
20.85 0.8908
AT5G56220 P-loop containing nucleoside t... Potri.001G472200
[exp]
21.63 0.8926
AT2G47260 WRKY ATWRKY23, WRKY2... WRKY DNA-binding protein 23 (.... Potri.002G193000
[exp]
23.21 0.8937 Pt-WRKY48.2
AT4G14465 AT-hook AHL20 AT-hook motif nuclear-localize... Potri.010G074201
[exp]
23.51 0.9023
AT2G24430 NAC ANAC039, ANAC03... Arabidopsis NAC domain contain... Potri.006G277000
[exp]
28.14 0.8985

Potri.003G020701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.