Plant FIBer expression Database

Potri.003G020800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G33270 491 / 3e-174 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G209500
[exp]
632 / 0 AT1G33270 505 / 9e-180 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020983
[exp]
544 / 0 AT1G33270 508 / 3e-180 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0323 Patatin PF01734 Patatin Patatin-like phospholipase
Representative CDS sequence
>Potri.003G020800.1 pacid=42786100 polypeptide=Potri.003G020800.1.p locus=Potri.003G020800 ID=Potri.003G020800.1.v4.1 annot-version=v4.1
ATGGGATGGTTTTTCTCTTCAAAACCCAGAAGACGACCACCAAAGTATTCTTCAATGGCTCCACCTCCTCCCTCCCTCTCTTCTCTTCTCCCCCACTCTC
ATTCTTTCCTTCCTCCCCAAAACCCTCATCTCACCCACCGTTACATGCCCTCTCCCCGCCCCTCTCATTCTTTATCTTTCACTACGAGATTTTCTCCCGA
CAACAAGCTAAACGACGACAAGATCACGTACCCGCCCCCGCAGCAGGAGAAGAAATCGTTTGCTGTTGCCACCGGTGAGCTTTTCTTGGGAATCGCGTCA
AGGGTTTTGAGGAGCAGGAATAAGAATAGTTATAATAACAATAAAGTTTCTGGGCTGTCTTTGCTTGAGAAATCTGATGATGGGAATGTGGATTATGAGG
AGAGGATTCGGGCTGTGATGGAGGATGAGGTTGAGCCTGTGGTTATATGGGAACAAAGAGTTAAAGATATTGAAGCGGAGAAAGAACGGCCTGTTGTTAC
CAGTCCTGGTTTTTGTTTCTCTGCTGCTGGTTTGTTGTTTCCTTATCATCTTGGAGTTGCTCACTTGCTTATTGAAAAGGGTTATATCAAGGAAACCACA
CCATTGGCTGGTTCCTCTGCTGGTGCTATAGTCTGTGCTGTGATTGCCTCTGGGGCTGGTATGCAGGAGGCTCTAACAGCTACCAAAGTGCTGGCTGAAG
ATTGTCGGCTAAGAGGGACTGCCTTTCGGCTTGGGGCTGTTCTGCGGGATATTCTTGAAAAGTTTCTGCCAGATGATGTTCATGTTAGGTGCAATGGGAG
GGTTCGAATCGCTGTTACTCAGATCCTGTGGAGGCCTAGGGGTTTGCTAGTGGATCAGTTTGACTCCAAGGAAGATCTCATAAATGCAGTTGTGACTTCT
TCCTTCATTCCAGGATATCTTGCACCAAGGCCTGCCACGATGTTCCGGAATCGACTTTGTATTGATGGTGGTTTGACATTGTTTATGCCACCAACATCTG
CTGCTCAGACGGTTCGTGTTTGTGCTTTCTCGGCCAGCGGTTTGGGACTGCAAGGGATCGGGATTAGTCCAGATTGCAATCCTGAAAATAGGGCTACCCC
AAGGGAGCTTTTCAACTGGGCATTAGAGCCAGCAGAAGATCATATTCTTGACAGGCTTTTCGAGCTCGGATATTTAGATGCTGCTGTGTGGGCTGAGGAG
AACCCAGTTCAGAATGTAGTTCAAGATGACATTCCCTTGGTTGAAAATGGCTCTAGTAGCTCACAATAA
AA sequence
>Potri.003G020800.1 pacid=42786100 polypeptide=Potri.003G020800.1.p locus=Potri.003G020800 ID=Potri.003G020800.1.v4.1 annot-version=v4.1
MGWFFSSKPRRRPPKYSSMAPPPPSLSSLLPHSHSFLPPQNPHLTHRYMPSPRPSHSLSFTTRFSPDNKLNDDKITYPPPQQEKKSFAVATGELFLGIAS
RVLRSRNKNSYNNNKVSGLSLLEKSDDGNVDYEERIRAVMEDEVEPVVIWEQRVKDIEAEKERPVVTSPGFCFSAAGLLFPYHLGVAHLLIEKGYIKETT
PLAGSSAGAIVCAVIASGAGMQEALTATKVLAEDCRLRGTAFRLGAVLRDILEKFLPDDVHVRCNGRVRIAVTQILWRPRGLLVDQFDSKEDLINAVVTS
SFIPGYLAPRPATMFRNRLCIDGGLTLFMPPTSAAQTVRVCAFSASGLGLQGIGISPDCNPENRATPRELFNWALEPAEDHILDRLFELGYLDAAVWAEE
NPVQNVVQDDIPLVENGSSSSQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G33270 Acyl transferase/acyl hydrolas... Potri.003G020800
[exp]
0 1
AT3G23000 PKS7, ATSRPK1, ... SNF1-RELATED PROTEIN KINASE 3.... Potri.008G160200
[exp]
9.79 0.6941 CIPK4.1
AT3G54720 MFO1, HPT, COP2... PRIMORDIA TIMING, Multifolia, ... Potri.016G064300
[exp]
13.41 0.6846
Potri.005G062450
[exp]
16.49 0.6927
AT4G30820 cyclin-dependent kinase-activa... Potri.006G180900
[exp]
18.89 0.6461
AT4G34310 alpha/beta-Hydrolases superfam... Potri.014G034100
[exp]
21.11 0.7010
AT3G54460 SNF2 domain-containing protein... Potri.003G197701
[exp]
27.20 0.6590
AT1G24330 ARM repeat superfamily protein... Potri.010G058000
[exp]
29.66 0.5611
AT2G24640 UBP19 ubiquitin-specific protease 19... Potri.006G270600
[exp]
37.52 0.6354
AT5G13610 Protein of unknown function (D... Potri.010G216300
[exp]
42.57 0.5902
AT4G10790 UBX domain-containing protein ... Potri.003G145200
[exp]
44.22 0.6541

Potri.003G020800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.