Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24750 606 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT1G43620 98 / 2e-21 UGT80B1, TT15 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) AT3G07020 94 / 5e-20 UGT80A2, SGT UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G193100 [exp] 101 / 1e-22 AT1G43620 805 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Potri.002G067100 [exp] 101 / 2e-22 AT1G43620 800 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Potri.002G238600 [exp] 93 / 8e-20 AT3G07020 839 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G178300 [exp] 92 / 1e-19 AT3G07020 817 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020382 [exp] 100 / 2e-22 AT3G07020 790 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10018878 [exp] 101 / 3e-22 AT1G43620 849 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Lus10028572 [exp] 100 / 6e-22 AT1G43620 840 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Lus10020381 [exp] 98 / 2e-21 AT3G07020 568 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10009556 [exp] 96 / 1e-20 AT3G07020 707 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10009557 [exp] 90 / 7e-20 AT3G07020 261 / 6e-83 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10024544 [exp] 92 / 2e-19 AT3G07020 714 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10011882 [exp] 92 / 2e-19 AT3G07020 885 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10022815 [exp] 84 / 6e-17 AT3G07020 742 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10011883 [exp] 73 / 2e-13 AT3G07020 648 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G021100.1 pacid=42787466 polypeptide=Potri.003G021100.1.p locus=Potri.003G021100 ID=Potri.003G021100.1.v4.1 annot-version=v4.1 ATGGGACCTGAGACAGAGAACAGGAAGCCAGTGGCTGTGTTCATGGCTTTTGGTACGAAGGGCGATGTTTACCCTCTCTCTGCTATTGCCGCTGCTTTTG CTAGTGATCAGAAACAATACCGTGTGGTTCTAGTAACACATTCAGCACATCAGAACTTAAGCTCTCACTTGGAAGAAAGACATGTTACGTTTTTAGGAAT CAATTCACTGCCTGTTCTTTCTGTTTGCGACAATTATGGTGGTTCAGGATCACAGGAGTTAGCTTTTTCACAACAAAAAATGATAGCCACAAGAGAGCAC AGACAAGAATGCTATTCAGCAGTTGAAGGGATTTTTGGACATGGTCCAACCATGGAGGGTGATTTTATCTTGATAAATTTTTTTGCATTGGAAGGGTGGA GCCTTGCAGAACTTTTTCATATCCGTTGTGTGGTAGCTGCTCCATATGTTGTTCCATACAGTGCACCTTCCTTATTTGAGAGTCACTTTAGAAGAGAGCA TCCTCTTTTATATAAATATCTCCAAGAAGCTGACAGTAATCAGGTTTCCTGGAAAGATGTGGCTCATTGGATGTGGCCACTTTTTACCGAAAACTGGGGA TCATGGAGAAGTGATGATTTGTATCTGAGTCCTTGCCCTTTCACTGATCCAGTAACAGAGCTTCCCACTTGGCATGATAGGCCACCGTCTCCCCTACTGC TGTATGGATTTAGCAAAGATATTGTTGAATGTCCAGATTATTGGCCATCAAATGTCCATGTTTGTGGGTTTTGGTTTCTTCCTACTGAATGGCAGTTTTC ATGTAAGAAATGCCAAGAAATTTCAGAACTTTCTTATCCTGGAGATTTGAGGACAAAAGATGAAGTGTGTTCAGCTCATGTCAAGTTACAATGTTTTCTG ATAAATCCAGCATCAACACCTCCTGTTTTCATAGGACTAAGTTCTATTGGAAGCATGGGCTTCTTGAGGAACCCTCAAACATTTCTTCAGGTAATTCAAA CTGTCCTGGAGATCACAAATTTCAGATTCATCCTTTTTACTGCTAGCTATGAACCTTTGGATGAAGCTGTCGAAGTTATTGCCACTGACTCGTCACATTT TGATAAAAGAAAGTACCTTGAAGAGGGAATCTGTCTCTTTGATAACCGCCTCTTTTGCTTTCCTAATATGGTACCTTACCAATGGCTATTTCCAAGATGT GCAGCTGCAATTCATCACGGGGGCAGTGGATCCACTGCTGCAGCACTACACGCAGGCATCCCACAGGTATTATGTCCATTTATACTGGATCAGTTTTATT GGGCTGAGAAGATGTATTGGATTGGAGTTTCCCCAGAACCATTAAACAGAAGCCATTTGATTCCAGATAAACTGGACGATGTGAGCATCAGAATGGCTGC AAAAGTTCTATCAAGGGCCATAAATGATGCCCTGTCTCCAAACATCAAAGCACGTGCTTTGGAAATTGCGGAGAGAATTTCTCTTGAGGATGGAGTCATG GAAGCCGTAAAGATCCTTAAACAAGAGATGAATTGTTCGTGTTAA
AA sequence Show only first row Show all	>Potri.003G021100.1 pacid=42787466 polypeptide=Potri.003G021100.1.p locus=Potri.003G021100 ID=Potri.003G021100.1.v4.1 annot-version=v4.1 MGPETENRKPVAVFMAFGTKGDVYPLSAIAAAFASDQKQYRVVLVTHSAHQNLSSHLEERHVTFLGINSLPVLSVCDNYGGSGSQELAFSQQKMIATREH RQECYSAVEGIFGHGPTMEGDFILINFFALEGWSLAELFHIRCVVAAPYVVPYSAPSLFESHFRREHPLLYKYLQEADSNQVSWKDVAHWMWPLFTENWG SWRSDDLYLSPCPFTDPVTELPTWHDRPPSPLLLYGFSKDIVECPDYWPSNVHVCGFWFLPTEWQFSCKKCQEISELSYPGDLRTKDEVCSAHVKLQCFL INPASTPPVFIGLSSIGSMGFLRNPQTFLQVIQTVLEITNFRFILFTASYEPLDEAVEVIATDSSHFDKRKYLEEGICLFDNRLFCFPNMVPYQWLFPRC AAAIHHGGSGSTAAALHAGIPQVLCPFILDQFYWAEKMYWIGVSPEPLNRSHLIPDKLDDVSIRMAAKVLSRAINDALSPNIKARALEIAERISLEDGVM EAVKILKQEMNCSC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24750			UDP-Glycosyltransferase superf...		Potri.003G021100 [exp]	0	1
AT3G62970			zinc finger (C3HC4-type RING f...		Potri.014G134400 [exp]	1.00	0.8133
AT1G72990		BGAL17	beta-galactosidase 17 (.1.2)		Potri.003G037000 [exp]	4.47	0.7596
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Potri.001G159400 [exp]	7.21	0.7769
AT3G26740		CCL	CCR-like (.1)		Potri.003G163402 [exp]	11.74	0.7222
					Potri.008G045532 [exp]	12.36	0.7275
AT4G14820			Pentatricopeptide repeat (PPR)...		Potri.008G154301 [exp]	17.86	0.7134
AT1G28090			Polynucleotide adenylyltransfe...		Potri.003G164400 [exp]	20.49	0.7368
AT2G40570			initiator tRNA phosphoribosyl ...		Potri.018G087300 [exp]	25.09	0.6865
AT5G54520			Transducin/WD40 repeat-like su...		Potri.001G410500 [exp]	25.29	0.7249
AT5G47900			Protein of unknown function (D...		Potri.014G123800 [exp]	26.49	0.6829

Compare expression of checked genes

Potri.003G021100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.