Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33230 459 / 6e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G26450 446 / 6e-151 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G47030 434 / 3e-146 VGDH1 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05610 434 / 3e-145 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G49180 427 / 5e-144 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G27870 432 / 1e-143 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G47040 426 / 2e-143 VGD1 VANGUARD1, Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G06830 405 / 2e-135 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G62170 400 / 2e-133 VGDH2 VANGUARD 1 homolog 2 (.1) AT3G14310 379 / 8e-125 ATPME3 pectin methylesterase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G209200 [exp] 940 / 0 AT5G49180 459 / 2e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G209000 [exp] 775 / 0 AT4G33230 483 / 2e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G021600 [exp] 767 / 0 AT4G33230 484 / 1e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.006G134700 [exp] 484 / 8e-166 AT4G33230 608 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.018G051200 [exp] 484 / 9e-166 AT2G26450 634 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G010464 [exp] 440 / 6e-149 AT5G27870 619 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.013G013400 [exp] 439 / 2e-148 AT3G05610 580 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.005G022900 [exp] 434 / 1e-146 AT3G05610 593 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G072800 [exp] 399 / 7e-133 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023775 [exp] 750 / 0 AT5G49180 454 / 3e-154 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10003968 [exp] 745 / 0 AT5G49180 456 / 3e-155 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018335 [exp] 468 / 3e-159 AT3G05610 446 / 3e-149 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039927 [exp] 449 / 9e-152 AT2G26450 598 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006940 [exp] 445 / 7e-151 AT3G05610 569 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10002976 [exp] 430 / 2e-145 AT2G26450 429 / 2e-144 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10020909 [exp] 408 / 2e-136 AT3G05610 547 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10033466 [exp] 404 / 8e-135 AT3G05610 556 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027656 [exp] 390 / 1e-131 AT4G33230 499 / 6e-174 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039314 [exp] 372 / 8e-123 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase CL0268 [poplar] [flax] PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.003G021300.1 pacid=42787186 polypeptide=Potri.003G021300.1.p locus=Potri.003G021300 ID=Potri.003G021300.1.v4.1 annot-version=v4.1 ATGCTTGGAAAAGTAATTGTTTCGGGGGTTTCCCTGATCCTTGTTGTGGGGGTGATCATTGGCGTGGTAGTTACTGTTAATCGCAGCAATGGATCCAATG ATACAGAGAGCTTGTCACCTCAAATGAAGGCTGTTAGCGCACTATGCCAGCCTACTTATTACAAAGAGGCTTGCACTAACACCCTCAGTGCCCTGAACTC TACCGATCCCAAAGAACTAATCAAAGGAGGCATATTAGCCATCTCTGCTTCATTGAAGAATTCTTTCAACGTGACTGATGATCTCGTAGCCAAGACCGAT AACGCAAGCCGTGACAAAATGGCCTTGAATGACTGCAAAGAGTTATTGCAAAATGCTTCTGAAAGCCTTGAGGACACATTGTCAAAGGTAGGTGAAATTG ATTTACTTTCACTATCAAACCGTACAGACGATTTTCGAACATGGTTGAGTTCAATTATTGGATACCAAGAAATGTGCTTAGATGGTTTTGAGAATGGCAG CTCCTTGAGGGATCAAGTGCAAAAAAGCACGGACTACGGAAGCGAACTTACAGACAACGTCTTGAATATCCTTGCCGGGCTTTCACAAGTTCTGAATTCC TTGGGGCTCAAGCTCAATATTCCCAGCACCTCTCGTCAACTTCTTCAAGCTGATGGTTTTCCCACTTGGATGTCTGCTTCTGACCGTAAGCTTTTGGCCT CACGCGGAAATGGTGGGGTTAGACCTAATGCAGTTGTGGCTCAGGATGGCAGTGGGCAATTCAAGACCATCAGCGCAGCACTTGCCGCATATCCTAAGAA CCTCAAGGGCCGATATGTTATCTATGTTAAGGCAGGAACCTATCGTGAGTATGTGGCTGTAGCCAAGGACCAACCCAACGTGTTCATCTATGGTGATGGA TCCAGGAAGACCATTGTCACTGGAAACAAGAGTTTTGCAAAAGATGGCCTTGGCACCTGGAAAACTGCTACATTTATTGTTGAGGCAAATGGATTCATCG CCAAGTCCATTGGATTTACCAACACTGCCGGTCCTGATGGCCACCAGGCTGTTGCAATCCGAGCTAATTCTGATATGTCAGCATTCTACAACTGCAGGTT TGATGGCTATCAAGACACGGTGTTGTACCAAGCTGGGCGCCAGTTCTACCGCAATTGTGTCCTTTCAGGCACCGTAGATTTCCTATTTGGTTATGGATCA GCGGTGATCCAAAACTCCTTGATCATTGTCCGAAGGCCAAATCCAAACCAATTCAACACGGTGACTGCAGATGGCAGGAAAGAGAGGGGTCAACCCGGAG GTGTTGTCATTCATAACTGCAGGATCGTCCCTGAGCAGAAGCTTGTCCCCGACAGGCTCAAGATCAAGACATACTTGGGCAGGCCATGGAAGGCATACTC GAGGACTGTTGTGATGGAGTCAAAGTTAGCAGACTTCATTCAGCCAGATGGATGGGCGCCATGGAGTGGAAACGAATTTCTTGACACTCTCTACTATGCC GAGTATGCCAACGCTGGCCCTGGTGCAGCAACTAACAGGAGGGTCAGGTGGAAAACTCTCCATTTCCTCAAGAGGAGTGAAGCTCTTCAATTCACTGTTG GTACATTCCTTCAGGGTGGCCAATGGATTAAAAACAACGGAATTCCAGTCTTGATGGGCCTGAGAAAATGA
AA sequence Show only first row Show all	>Potri.003G021300.1 pacid=42787186 polypeptide=Potri.003G021300.1.p locus=Potri.003G021300 ID=Potri.003G021300.1.v4.1 annot-version=v4.1 MLGKVIVSGVSLILVVGVIIGVVVTVNRSNGSNDTESLSPQMKAVSALCQPTYYKEACTNTLSALNSTDPKELIKGGILAISASLKNSFNVTDDLVAKTD NASRDKMALNDCKELLQNASESLEDTLSKVGEIDLLSLSNRTDDFRTWLSSIIGYQEMCLDGFENGSSLRDQVQKSTDYGSELTDNVLNILAGLSQVLNS LGLKLNIPSTSRQLLQADGFPTWMSASDRKLLASRGNGGVRPNAVVAQDGSGQFKTISAALAAYPKNLKGRYVIYVKAGTYREYVAVAKDQPNVFIYGDG SRKTIVTGNKSFAKDGLGTWKTATFIVEANGFIAKSIGFTNTAGPDGHQAVAIRANSDMSAFYNCRFDGYQDTVLYQAGRQFYRNCVLSGTVDFLFGYGS AVIQNSLIIVRRPNPNQFNTVTADGRKERGQPGGVVIHNCRIVPEQKLVPDRLKIKTYLGRPWKAYSRTVVMESKLADFIQPDGWAPWSGNEFLDTLYYA EYANAGPGAATNRRVRWKTLHFLKRSEALQFTVGTFLQGGQWIKNNGIPVLMGLRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33230			Plant invertase/pectin methyle...		Potri.003G021300 [exp]	0	1
AT2G13542			unknown protein		Potri.013G008750 [exp]	1.73	0.9708
AT1G01460		ATPIPK11	Phosphatidylinositol-4-phospha...		Potri.014G093300 [exp]	2.00	0.9618
AT3G21490			Heavy metal transport/detoxifi...		Potri.010G015300 [exp]	4.47	0.9458
					Potri.010G007402 [exp]	32.78	0.9282
AT3G47570			Leucine-rich repeat protein ki...		Potri.018G120901 [exp]	35.07	0.9271
					Potri.012G055401 [exp]	36.08	0.9088
AT4G23490			Protein of unknown function (D...		Potri.012G107800 [exp]	39.06	0.9264
					Potri.004G216400 [exp]	41.56	0.9256
AT3G14260			Protein of unknown function (D...		Potri.003G125300 [exp]	43.26	0.9248
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Potri.018G033600 [exp]	44.72	0.9243	GA3ox4,Pt-WGA3.2

Compare expression of checked genes

Potri.003G021300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.