Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33230 484 / 1e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G27870 470 / 1e-158 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G26450 465 / 5e-158 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05610 464 / 4e-157 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G47030 435 / 8e-147 VGDH1 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G49180 434 / 2e-146 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G47040 430 / 1e-144 VGD1 VANGUARD1, Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G62170 428 / 5e-144 VGDH2 VANGUARD 1 homolog 2 (.1) AT3G06830 416 / 1e-139 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G14310 402 / 4e-134 ATPME3 pectin methylesterase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G209000 [exp] 1034 / 0 AT4G33230 483 / 2e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G021300 [exp] 767 / 0 AT4G33230 459 / 5e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G209200 [exp] 750 / 0 AT5G49180 459 / 2e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.018G051200 [exp] 524 / 0 AT2G26450 634 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.006G134700 [exp] 512 / 1e-176 AT4G33230 608 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G010464 [exp] 462 / 2e-157 AT5G27870 619 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.005G022900 [exp] 446 / 3e-151 AT3G05610 593 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.013G013400 [exp] 445 / 6e-151 AT3G05610 580 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G072800 [exp] 426 / 2e-143 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003968 [exp] 672 / 0 AT5G49180 456 / 3e-155 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10023775 [exp] 672 / 0 AT5G49180 454 / 3e-154 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10002976 [exp] 498 / 4e-172 AT2G26450 429 / 2e-144 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018335 [exp] 481 / 1e-164 AT3G05610 446 / 3e-149 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039927 [exp] 471 / 2e-160 AT2G26450 598 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006940 [exp] 430 / 6e-145 AT3G05610 569 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027656 [exp] 416 / 6e-142 AT4G33230 499 / 6e-174 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10020909 [exp] 407 / 4e-136 AT3G05610 547 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10033466 [exp] 404 / 8e-135 AT3G05610 556 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013344 [exp] 381 / 3e-126 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase CL0268 [poplar] [flax] PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.003G021600.1 pacid=42785042 polypeptide=Potri.003G021600.1.p locus=Potri.003G021600 ID=Potri.003G021600.1.v4.1 annot-version=v4.1 ATGTTGCGAAAAGTAGTTATTTCTGCTATTTCCCTCTTTCTTATTGTCGGTGCTGTCATCGGGGTGGCGGCTCTAGTGCAACCCCATCAGAAGGGATCCG ATGGAGAAAACGAAGCAGGAAACATATCTGCATCAATGAAGATCGCTAATCAGCTATGTCAACCGTCAGATTACAAGGAGGCGTGCACCAAGACCCTCAG CTCTGTGAACAGCACCGATCCTAAGGAATTTGTCAAGCATGCTATATTAGCTGCCTCAGATGCTGTGACGAAATCATTCAACTTCTCCGAGGAATTGATC GTCAAGGCCAGTAAAGATAAGCGCGAGAAAATGGCCCTGGACGATTGCAAGGAGTTGTTGGACTATGCCGTTCAAGAACTTCAGGCGTCAATGTCAATGG TGGGAGATAGTGATTTGCACACCACAAATAACCGAGTTGCAGAGTTACAAAGTTGGTTGAGCGCTGTCCTTGCATATCAAGAAACATGCGTGGACGGGTT CGATGATAAGAGCACCATCAAGCCTATCATTCAACAAGGTTTCGTTAATGCTAGCCAGCTCACAGATAACGTTCTGGCTATCATCTCTGGCTTGTCAGAC TTCCTCAAATCCATGGGCCTCCAGTTTAACATTCCTTCCAACTCTCGTCGCCTTCTTGCCGAGGATGGATTTCCCACCTGGTTCTCTGGGGCTGATCGTA AGCTTTTGGCTGCACAAGACAAGGGTAAGGTTAAACCAAATGCGGTTGTAGCTCAGGATGGTAGTGGACAGTTCAAGACCATCAGTGCAGCCATTGCTGC ATATCCCAATAAACTCAAGGGACGATATATTATCTATGTTAAGGCTGGAACTTATCGCGAGTATGTTACTATTGACAAGAAGAAACCCAATGTGTTCATC TATGGTGATGGACCCAGGAAGACCATCGTCACCGGAAGCAAGAGCTTTGCCAAGGACGGTTTAGGCACATGGAAGACCGCTACTTTTGTGGCTGAAGCGG ATGGTTTCATTGCCAAGTCGATCGGATTCCAAAACACTGCTGGTCCTGACGGGCACCAGGCTGTGGCACTTCGTGTAAGTTCTGATATGTCAGCATTCCT CAACTGCAGGATGGACGGGTATCAAGACACGTTGTTGTACCAAGCCAAGCGTCAATTCTACCGCAACTGTGTTATTTCTGGCACAGTTGATTTCATCTTC GGTTATGGCGCTGCTGTGATCCAAAACTCCTTGATTGTCGTCCGAAGACCTAATGCCAACCAGCAGAACTCGGTGACCGCAGACGGCAGGAAAGAGAATC ATGCCACCACCGGTTTGGTCATCCACAACTGCAGGATTGTCCCTGAGCAGAAGCTAGTTGCTGATAGGTTCAAGATCCCAACATACCTCGGCAGGCCATG GAAGCCATTCTCCAGGACTGTTGTCATGGAATCAGAACTGGCAGATTTTATTCAGCCTGCGGGGTGGATGCCATGGGCCGGAAGCTTACATCTTGACACT TTGTACTATGCAGAGTATGCCAACAGAGGCGCTGGTGCAAATACCAACAAGAGGGTGAACTGGAAAACTTTCCATGTCATTAACAGGAACGAGGCTCTTC GATTCACCGCTGGCCAATTCCTTCAGGGCGCTGCTTGGATTAAAAATGCTGGAGTGCCTGTCTTGCTTGGCCTAAAACGATGA
AA sequence Show only first row Show all	>Potri.003G021600.1 pacid=42785042 polypeptide=Potri.003G021600.1.p locus=Potri.003G021600 ID=Potri.003G021600.1.v4.1 annot-version=v4.1 MLRKVVISAISLFLIVGAVIGVAALVQPHQKGSDGENEAGNISASMKIANQLCQPSDYKEACTKTLSSVNSTDPKEFVKHAILAASDAVTKSFNFSEELI VKASKDKREKMALDDCKELLDYAVQELQASMSMVGDSDLHTTNNRVAELQSWLSAVLAYQETCVDGFDDKSTIKPIIQQGFVNASQLTDNVLAIISGLSD FLKSMGLQFNIPSNSRRLLAEDGFPTWFSGADRKLLAAQDKGKVKPNAVVAQDGSGQFKTISAAIAAYPNKLKGRYIIYVKAGTYREYVTIDKKKPNVFI YGDGPRKTIVTGSKSFAKDGLGTWKTATFVAEADGFIAKSIGFQNTAGPDGHQAVALRVSSDMSAFLNCRMDGYQDTLLYQAKRQFYRNCVISGTVDFIF GYGAAVIQNSLIVVRRPNANQQNSVTADGRKENHATTGLVIHNCRIVPEQKLVADRFKIPTYLGRPWKPFSRTVVMESELADFIQPAGWMPWAGSLHLDT LYYAEYANRGAGANTNKRVNWKTFHVINRNEALRFTAGQFLQGAAWIKNAGVPVLLGLKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33230			Plant invertase/pectin methyle...		Potri.003G021600 [exp]	0	1
AT1G18760			Zinc finger, C3HC4 type (RING ...		Potri.002G083001 [exp]	1.41	0.9898
					Potri.019G042001 [exp]	1.73	0.9830
AT1G77450	NAC	ANAC032	NAC domain containing protein ...		Potri.001G220500 [exp]	2.00	0.9851
AT5G62380	NAC	ANAC101, VND6	VASCULAR-RELATED NAC-DOMAIN 6,...		Potri.006G231300 [exp]	5.19	0.9402
					Potri.012G116551 [exp]	14.21	0.9034
					Potri.019G040151 [exp]	15.03	0.8964
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Potri.006G148200 [exp]	15.09	0.9199
					Potri.011G044012 [exp]	16.43	0.9602
					Potri.004G174850 [exp]	20.56	0.8811
AT2G20710			Tetratricopeptide repeat (TPR)...		Potri.011G051700 [exp]	21.63	0.8687

Compare expression of checked genes

Potri.003G021600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.