Potri.003G021700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G22970 1739 / 0 RSW4, AESP RADIALLY SWOLLEN 4, homolog of separase (.1.2)
AT5G28550 140 / 3e-36 unknown protein
AT4G24300 79 / 1e-16 Peptidase C50, separase (.1)
AT4G22440 44 / 7e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006990 1893 / 0 AT4G22970 1435 / 0.0 RADIALLY SWOLLEN 4, homolog of separase (.1.2)
Lus10009044 161 / 2e-39 AT4G22970 177 / 1e-44 RADIALLY SWOLLEN 4, homolog of separase (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0093 Peptidase_CD PF03568 Peptidase_C50 Peptidase family C50
Representative CDS sequence
>Potri.003G021700.1 pacid=42785867 polypeptide=Potri.003G021700.1.p locus=Potri.003G021700 ID=Potri.003G021700.1.v4.1 annot-version=v4.1
ATGGCGGCGTCTGTGGAGGAATCTTCTGCTCTAATCTCCAAACTCGAATCTCCATCCATTTCCACACCAATCTATTCTCCGTTCTCGAATTACCTTCTCC
CATTCACCGATCTCTCCAAAAAGCCCCTAAATCAAAACCAAACCCTAACCCTAACCCGATCTCTCGCCAAGAAGTTCCTTCCATTCGTAAACCGCTGCCT
TTCCATTCTACCCAAACGCCTCTCCGATCTCCTCAACTCACCCTCCTTCAAGCAAGACGATGGCGGAATCCCCGAACTCGTCATCGAAATGTTCGATGCT
TACCGGCTCTGTTTGGATTGCTTGGAATCGGTGGCTTCGCAGTTGGCCGGTAAGCCCTACGCGGTGTATAGGCAGAGGTTGAGGCTGGCATGTTGTTTGG
ATGCTTGGGGATTGTACAGGGAGGGTGAGAATGAAGGGTTTCGGGTTCTGGAGAGGCTTAGGGGTTTGGATTCGGGACCGAAGTCGAAAAATAATAGGAA
GAAGAAATTAGGGGAATATTTGCCTGTTTTGCTTGAGGATGGGGATTTGGATTTTGCGAAGATGGTTGTGGAGGTTGCGGTGGCTATTTTGAAGTGCGTG
GCGTTAGGGCAGAGTAAGAATGATGAGGATTATAAAAGGGTTATTGGAATGGTACATGAGGTTAAACCCTGGTTCAGGGTGTTAGATGCCAATTCACATG
AGAAGTTACATAGGATGCTCGTGACCTACCTACGGAAGTGTACCCAGTTTCTCGCAGGGGAGCTAATGATTTTTGATGGAGGTACTGTGTGTGCTTTCTG
TACAGCAACTTTAAATGAGTATGCAGAGTCGTCTATGAAGGATCAAATTTACAAGTTTGCTCGTCATATCTGCTCTGTTTTCTTCCTTCAAGTTGATAGA
TATTCAGTCAAATTTGACATACTGATGTGTGTTTTGGACTCACTTGCCCAAAAATGCAAGGTTGAAGTGGAAATTTGGGGAACAGAATTAGTTGAACTTG
TCGCTTATTGTGCCAGTAAATGTCATGCTGCAACCACAATTTCTTGTAGTACTTTTGCAGAATGCCTAAATGATTTAGCTGGCGCTTTCTGTCAGGTTAT
GACACCATTGGAAATGATTATCAGACTTTATGCCATTGGATTGTCCTTCATTGATCATAATGCTAAGTCCATGATTGGTGATGTTATGCCATCCAAAGGT
GCAAAAGATGAGCATGCAGTTGGTATTCTTGATGGAGTTACACTTTGCAATTTAGCACCCGTACTTGGTTCCTTACGAAGCTACTTTTATGATAATTGCG
AAGAGAACTGTGTGTTATGTGGGATTGACTACCAAGATCTTGCTTCTGATATACATTTAGATTCTCACCATGGAACCTTATTAAATTGCACACAAAAAAG
TAGAGAGGTTTATCTACTAGCTTACTTAAATGTACTGAAGTTCCTCTGTAAGCCGCTTTCTGAACGTGTGATCTCTCAGAACAAACAGATAATTTTCGAA
AATGATGTTGCTTCTCTTTCTATGATGCTGTGTAGTATCCAAGAAGCATTTCATCAGTTCAGTGACATTGTTTTATATTTTCACAGAAACAAATCTAAGA
GGGAGGCAGCTGGTTTTGATGAGAACAAGATGATTCTTACTGTATCTGTTGCTACTTTCATTCTATCCAGCAGAACAAAACACAAGTTGCAGAAGAGTGT
TCATCTAATTAAGCAGATCATTGCTAGCGAATGGATCCAACCTCAGGGGTTGAAATATATATCTGCTTCCCTATACAGTGTTGGCTTACTTTTGTATAGA
AATAAACAAGTGAATGAGGCTTTGAAGCCATTGAAATTATGTTGCAGAGCATCATGGAAATGTGTCAAACTTCTATCTGAGATGTCTATGCAAAAGTCTG
AAGGGTTTGTTGGTGATCTTTCAGAAGATGCTATTCTGGATTTTGTCACTGAGGCATGCAACCAAACAGTTTTTCTTTTGGATGTTCTCCATAAATCTGG
CAGTCTTAGGGTGAAAAAGATCATTGTAAACAGTCTTGAAAATTGGTCTGTTGCTGAAGATTTGTTCAGAAGGCTGTCAGGTCCTGTGCCTTTGGTGAAA
CAATGGGTGAAGATGCAATGTGAGAATAATAAGAACATGATTGTGGATGATGATGCTCCAACCTTGTACTGTTTGCTATCATCGTCTATGAGAGTGTCAA
AGAGGACAATTGGTAAAATTTTACAGCAGGAGCTTCTTGCTTACGAAGAAATGTATGCTGTGCATCCTGAATTTTGTCAAAGAATGCAAATGGAAGTTAT
AGATATCCTCTTGAAAGATGTATATGTCACAGATAGTCATTTGCAGAAATCAAGAGTTTTGATCAGAAAAGGACGGGCACTGAGGTCCTGTGGTTCTGAA
GGTTTGGAGGACTGTATACAATGCTTGTCAGAAGCAATCTCTGTAATTAATGATGAATCATGTAGCCATGGAACTCCTGCCTGTCATCATTTAGCCGTGA
CATATTGCCTACGTGCACTATGTACCCAGGAAGTGGAACCAAACTCAAAGCAAGTCTTTCAAGATATCAAAGCTGCCTTAGATCTTTGGTTAAGCATTCC
AATCCCAGATTATGGCATTGCGTACGATGAGGGTATCATGTCGCCTGACAGTGCACTTTTGTTTCTATATAATATAGTTGATTTGTTAGCAATGAAGGGT
TCTATGGAATTTCACAATGACATATATAAGTTGATGATTAGATTGTTTGAATGGAAGAATGTCCAACTGGAGATGTGCTTATCCATTTTGTGGGAGAGTA
GAAGGCTTACCCATGCTCTTTGTGTTTCACCTGTAAATGATGCTTTGATAATGACCTCACCAGGTTTTTCTGGAGAACAATTCAGGTCTATTGATTCCTG
GATTCATTGTCTAAAGGGGTCCCCACCTTTATTAGTTGGGTTCCAACATAACTTTTCATATCTATTTACAAACTTTCATTGCGACCCTGACAATCAGAAA
CCTTACAAGTCTGATATCACTGTTGATGATGTTAAAGAAGCTGCCTTTAAACTCATTTCGAGTGTTCCTGCCACAAGCTATTCTTTTTTCATTGCTGGAC
ATCTTTACTATGATTTGTGTGAAAGACTTCTTGCAAATGGGCGTTTGTTTGAGGCACTTTCATATGCTAAAGAAGCTCACCGGTTGCGTACTAAACTCTT
TAAAGAGAAATTTATGTATACTGTTGAGAAGCAATCAGAAAACTGCACTGGAGCTGGCAGTGATATGCAGAAGAATACATATGGTCTTTCTGATGTAAGA
ATGCAAAAATCAGTTGCTTGTGAAGTTTGGTCATTCGATACCCTTCCACAGGACATGGATGCCTGTTATCTTAGCCCATGGAAAATACTTCAGTGTTACC
TTGAAAGCACTCTCCAGGTTGGAACTATCCATGAATTAATTGGAAATGGAATTGAGGCTGAAATTTTTTTACGGTGGGGTAAAGACATCTCCCGCTCCCA
ATGCTTGCCGCTATTTATAGTTGCCTTTTCCTCTGTTTTAGGTAAACTGTACTGCAACAAGGGGTCTTGGGATCTGTCAGAAAAGGAACTTCGAAATGCC
AAACACGTTTTGGTACATGGCTGTGCAGATTTTTCTTGTTTAAAGTGTGGATTGATGCTTGAAGCCACAATTGATCAACGACTTGGTGATTTATCCCATA
GTCTCTTTAATACAACAAGGAGTATAGAGAGACTATCTCTTGCTGAAAGTTTGTACAGATCAGCCCTAGACAGACTAGGTCATCCTGAATGGAAAAACTC
TGTTAGCTATTCCAAAGATGTGGAAGAAATTGAGGGAGCTTCTGTCTGTTTCCCTACTTGTCAGGTGGGGCCTAAATTGAAGATGGAAAGTCAAAAGTGT
AGAAAGACTAAAAAGGCAACAAAATGTTTGCTAAAGGAGCAATCTTCTGTAACGGAGCACAATACTAGATTAACTCGTTCCAGATATCATTCTTTTCAGA
ATCAGAAAGTAGACAGTTCTGCTGAGGTACAAGTCGGCCCTTTAAATCAATTGAAAGGAAACAAAACATGCGATATAGTTGATCCTAATGGTCAGAGGCA
GTGGCTCTCTGGAAGAAAAAGTTGCATGGTTGATTTGGGGTGTGAAATCATTTGCATTTGCAATGGAAAGAAGTGTTGGTTTTGCCTTGCGAGGGAAGTT
AAGGAATCTGGATTGTTGAGCAATTTCATATATCTGAAATGGGAGTTTGCTCGTAGGCGGCTATCAATAAGGCTACTATCTGGCATTGGAAAATGCCTGG
AAATTCAAGGCAGATTTCATGAAGCACATGAAATTATTTCACAAAGCATCTCTGTCCTAGTCAGCCGAAACCCGTTCACTCATGCTCGTATTCCATTCAC
TTTCTTGCTTGATCTAGTCGGGAAAGAGTTGCCAGGGGATGTATTCAGTATAGAGCGTGCAGCAGTACTTTACGACATATCTTGGTGCTCTCTGAAGAGC
TACTCCTCAAAGGATAATGGGACTATCTGCTGTGATCTATACCATGTTCAAGTATCAAAAATAGTGTCTTGGTTGATGCTAGCATTTGTACTCTGCCGGC
AGGTTCCTGCAGTTCTTCAGAAGGTTTCCAGATTACTTTCAGCTATATTTGTACTTTCTTCTTCTAGCAAGACATTTTCGTTGTCAAATTATAGCAAAGT
TCTCTCAGAAAGTCATTGGGCTTCATTTTTTCATCAAGCTTCACTTGGAAATAACCTTAACTGTCAGTTCCTCTCAAATACAACTCTGAAGCATAAAGCA
CAGAACTTTGCCGATGATCAGGGCTCATGTGTGACTGCTTCAGCTTGGGAAGGAGCAGAAACATGCAACTTACCAAGGCTTGCTCCCGAGTCTTTTCAAG
ATTTGGAACAATTTGTGACAGAATTTTATTCAGGCCTTCCTTGCACAACCGTCATTTGCATAAGTTTAATCGGAGGACCTTGCGCAAATTTATTAAAAGA
TCTACTGCAATATCCTTCATGTATTAGTGCATGGATGTTGTTGTCACGCTTAAAGTTTAAGAGTCAACCTATTATGATGCTTCTGCCTGTGAATAAAGTT
TTAGAAGAAACTTCAGATGATGATTGTGCTATGTCTTGCACTGGAGAGTTTCTTGTGAGCAACAACTTAGATAAACACTGGCATTGTCCCTGGGGTTCGA
CAGTGGTTGATGATGTGGCTCCAACATTTAGATTTATATTGGAGGAGAATTACTTATCTTCATCAAAATTTCCCCTGGAAGACACAAAAGAGAATAGAAA
TTTATGGTGGACGAAGAGAAAAGAGCTTGATCATCGACTTGGCAAATTACTGAGGAAAATTGAAGATTCATGGCTAGGCCCTTGGAGGTGTGTTCTTTTA
GGAGATTGGTTCAACTACTCACGCCTGGATTCTATAATGAAGAAGCTGGTGCATGATTTGAAATCCAAATGCAAAATCAATACAAATGAAAGCTTTCTTA
AGGTTATTCTTCAAGGTGCAGGACATTCTTTCAATGAAGAAGCTTGTATTTCGTCATTAATGTCTCTTAAAAAGGGTTGCTTCATTGCTCAAGCTGGATA
TTCAGAAGAGAAAAGGTGTGAGATATTTTCTGAAGTGTCTGAAGGGGCCAAGAAACTGTCTGACCTTGCTGTCCAATTGGTATATGATGCTGTGAATGAG
CTTCAAGAAGAAGAGTCCACAATTAGAGAACCGGTAATTTTGGTGCTTGACTATGAGGTGCAGATGCTTCCATGGGAGAACATTCCGATACTAAGAAACC
AGGAGGTTTATCGAATGCCATCTGTTGGCAGCATCTGCTTCACACTTGATAGAAGCTGCCGCCAACAGGAGCAAGTTGAGAAGATCACTACTGCCTTCCC
TTTGATAGATCCCTTGGATGCATTTTATTTGCTGAATCCTGGTGGTGATCTTAGCAGCACGCAAGTGGAGTTTGAGAACTGGTTTATAGATCAAAATTTG
GAGGGGAAGGCTGGATCTGCTCCCACTTCTGAAGAATTGTCCTCTGCCTTGAAAAATCATGACCTCTTTATATATTTCGGCCATGGAAGTGGCGCACAAT
ACATTTCCCAGCAAGAGATTCAGAAACTGGAAAATTGTGCGGCTACTCTTCTAATGGGATGCAGTAGTGGTTCGTTATCGTTAAATGGGTGTTATGCCCC
CCAAGGTACTGCACTATCGTATCTACTTGCTGGTTCTCCTGTCATTGTAGCTAATCTTTGGGAAGTGACAGACAAAGACATAGATAGATTTGGGAAGGCT
ATGCTTGATGCTTGGTTAAAGGAAAGATCTAGTGTTTCCTTAGGATGCGATCAATGCAATTTAGTAGCCAAAGAATTTGAGGCAATGAACATAAAGGCTG
GTAAAGGTAAGGCAAAGAAAAAAGTTCCGAAAACAAAAGCTGCCGGAACATTTGATGGTGGTGTTGTAATAAATTCTTGCGACCACAGACCAAAGATTGG
AGCATTCATGGGTCAGGCTCGTGAAGCTTGCACCCTCCCTTTCCTCATTGGAGCATCACCAGTATGTTACGGAATCCCCACGAGTATAGGGATAAAGAAA
GATTTATAG
AA sequence
>Potri.003G021700.1 pacid=42785867 polypeptide=Potri.003G021700.1.p locus=Potri.003G021700 ID=Potri.003G021700.1.v4.1 annot-version=v4.1
MAASVEESSALISKLESPSISTPIYSPFSNYLLPFTDLSKKPLNQNQTLTLTRSLAKKFLPFVNRCLSILPKRLSDLLNSPSFKQDDGGIPELVIEMFDA
YRLCLDCLESVASQLAGKPYAVYRQRLRLACCLDAWGLYREGENEGFRVLERLRGLDSGPKSKNNRKKKLGEYLPVLLEDGDLDFAKMVVEVAVAILKCV
ALGQSKNDEDYKRVIGMVHEVKPWFRVLDANSHEKLHRMLVTYLRKCTQFLAGELMIFDGGTVCAFCTATLNEYAESSMKDQIYKFARHICSVFFLQVDR
YSVKFDILMCVLDSLAQKCKVEVEIWGTELVELVAYCASKCHAATTISCSTFAECLNDLAGAFCQVMTPLEMIIRLYAIGLSFIDHNAKSMIGDVMPSKG
AKDEHAVGILDGVTLCNLAPVLGSLRSYFYDNCEENCVLCGIDYQDLASDIHLDSHHGTLLNCTQKSREVYLLAYLNVLKFLCKPLSERVISQNKQIIFE
NDVASLSMMLCSIQEAFHQFSDIVLYFHRNKSKREAAGFDENKMILTVSVATFILSSRTKHKLQKSVHLIKQIIASEWIQPQGLKYISASLYSVGLLLYR
NKQVNEALKPLKLCCRASWKCVKLLSEMSMQKSEGFVGDLSEDAILDFVTEACNQTVFLLDVLHKSGSLRVKKIIVNSLENWSVAEDLFRRLSGPVPLVK
QWVKMQCENNKNMIVDDDAPTLYCLLSSSMRVSKRTIGKILQQELLAYEEMYAVHPEFCQRMQMEVIDILLKDVYVTDSHLQKSRVLIRKGRALRSCGSE
GLEDCIQCLSEAISVINDESCSHGTPACHHLAVTYCLRALCTQEVEPNSKQVFQDIKAALDLWLSIPIPDYGIAYDEGIMSPDSALLFLYNIVDLLAMKG
SMEFHNDIYKLMIRLFEWKNVQLEMCLSILWESRRLTHALCVSPVNDALIMTSPGFSGEQFRSIDSWIHCLKGSPPLLVGFQHNFSYLFTNFHCDPDNQK
PYKSDITVDDVKEAAFKLISSVPATSYSFFIAGHLYYDLCERLLANGRLFEALSYAKEAHRLRTKLFKEKFMYTVEKQSENCTGAGSDMQKNTYGLSDVR
MQKSVACEVWSFDTLPQDMDACYLSPWKILQCYLESTLQVGTIHELIGNGIEAEIFLRWGKDISRSQCLPLFIVAFSSVLGKLYCNKGSWDLSEKELRNA
KHVLVHGCADFSCLKCGLMLEATIDQRLGDLSHSLFNTTRSIERLSLAESLYRSALDRLGHPEWKNSVSYSKDVEEIEGASVCFPTCQVGPKLKMESQKC
RKTKKATKCLLKEQSSVTEHNTRLTRSRYHSFQNQKVDSSAEVQVGPLNQLKGNKTCDIVDPNGQRQWLSGRKSCMVDLGCEIICICNGKKCWFCLAREV
KESGLLSNFIYLKWEFARRRLSIRLLSGIGKCLEIQGRFHEAHEIISQSISVLVSRNPFTHARIPFTFLLDLVGKELPGDVFSIERAAVLYDISWCSLKS
YSSKDNGTICCDLYHVQVSKIVSWLMLAFVLCRQVPAVLQKVSRLLSAIFVLSSSSKTFSLSNYSKVLSESHWASFFHQASLGNNLNCQFLSNTTLKHKA
QNFADDQGSCVTASAWEGAETCNLPRLAPESFQDLEQFVTEFYSGLPCTTVICISLIGGPCANLLKDLLQYPSCISAWMLLSRLKFKSQPIMMLLPVNKV
LEETSDDDCAMSCTGEFLVSNNLDKHWHCPWGSTVVDDVAPTFRFILEENYLSSSKFPLEDTKENRNLWWTKRKELDHRLGKLLRKIEDSWLGPWRCVLL
GDWFNYSRLDSIMKKLVHDLKSKCKINTNESFLKVILQGAGHSFNEEACISSLMSLKKGCFIAQAGYSEEKRCEIFSEVSEGAKKLSDLAVQLVYDAVNE
LQEEESTIREPVILVLDYEVQMLPWENIPILRNQEVYRMPSVGSICFTLDRSCRQQEQVEKITTAFPLIDPLDAFYLLNPGGDLSSTQVEFENWFIDQNL
EGKAGSAPTSEELSSALKNHDLFIYFGHGSGAQYISQQEIQKLENCAATLLMGCSSGSLSLNGCYAPQGTALSYLLAGSPVIVANLWEVTDKDIDRFGKA
MLDAWLKERSSVSLGCDQCNLVAKEFEAMNIKAGKGKAKKKVPKTKAAGTFDGGVVINSCDHRPKIGAFMGQAREACTLPFLIGASPVCYGIPTSIGIKK
DL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G22970 RSW4, AESP RADIALLY SWOLLEN 4, homolog of... Potri.003G021700 0 1
AT5G49110 unknown protein Potri.010G011800 2.23 0.8525
AT5G07810 SNF2 domain-containing protein... Potri.012G067000 11.13 0.7738 CHR919
AT5G07740 actin binding (.1) Potri.015G061001 15.16 0.7792
AT4G32730 MYB ATMYB3R-1, PC-M... C-MYB-LIKE TRANSCRIPTION FACTO... Potri.018G038000 17.32 0.7739 MYB222
AT3G09080 Transducin/WD40 repeat-like su... Potri.006G096400 18.16 0.8298
AT4G14180 ATPRD1 putative recombination initiat... Potri.002G232700 20.00 0.8021
AT5G52910 ATIM timeless family protein (.1) Potri.015G024300 21.35 0.8193
AT5G01630 BRCA2(V), ATBRC... BRCA2-like B (.1) Potri.014G189600 23.23 0.7764 BRCA2.1
AT5G04480 UDP-Glycosyltransferase superf... Potri.010G232000 25.92 0.7824
AT2G23530 Zinc-finger domain of monoamin... Potri.007G036200 28.54 0.8075

Potri.003G021700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.