Plant FIBer expression Database

Potri.003G021900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G15200 290 / 1e-94 protein-protein interaction regulator family protein (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G208200
[exp]
483 / 1e-170 AT1G15200 314 / 1e-103 protein-protein interaction regulator family protein (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023800
[exp]
317 / 5e-105 AT1G15200 399 / 7e-137 protein-protein interaction regulator family protein (.1.2.3.4)
Lus10003959
[exp]
306 / 1e-100 AT1G15200 395 / 6e-135 protein-protein interaction regulator family protein (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04696 Pinin_SDK_memA pinin/SDK/memA/ protein conserved region
Representative CDS sequence
>Potri.003G021900.2 pacid=42784896 polypeptide=Potri.003G021867.1.p locus=Potri.003G021900 ID=Potri.003G021900.2.v4.1 annot-version=v4.1
ATGGTACAATACAAGCATCTTGCTGTAGAGGAAACGGAGGAAGAGCTCCAGCGAGAGATCGATGAGCTATATCGCCAACAACGCCATATTACAGAGCGCC
TTCGTGATCCTCGTGGACTTCGAAGAGGAGGGTTATCCTCCGCCGCCGCCGCCGCTCCTCGCAATTTCGTTGCTAACGGTGCTCGTCCTCGTGGCTTTGT
TCGACCGGCCGATAGGAACAATGCAGAAGATCAACCTCCTGCAAAACGGCGGCTTTTGTCTTCTGTTGTTAAGGTGGAGGAGGATGGAGAGAGCGTTGAG
GATTCTGCCACGGAAGAGGATGCAAAGAACGAGCAAATGGGTGAGGATGGAAATGTAGGGCCTGCTACAGGGATTCGGGGTGATGGAAAGCCTTTCAAGT
TACAGCAAAGTGGTTGGTCTAGGAGAGATTTTGATCTTAGAGCAGTGAAGAGGTGTGTTTTATGTGCGTTCATCTTCCTGCCAAGGGCGTTGCCTAAGAA
TCAGGATCCAAGATTGGTTAGCAGAAACAAAAGAATGCTGGGGCAACTTTTAGGTACTCTGGAGAAATTCAGAAAAGAAGATATGAAAATTTCAGGGACG
GAAGCATTTATACAAAGGTCAAATGCTTTGCAAAGAGCTGAGCAAAAAGCACATGAAGAACGTGAAAGGCTGAGACAACAAGAGTGTGAACAAATTGCTG
AACAGAGGAGAAGAGATCTGACTCTCAGAGCACGCATCACTGTAAAGGCTGAAGAAAAGAAATTGGAATTGCTGTTTCTTCGGTGGAATGATCACCACAA
AAAACTTAGCAATTTTATAAGGACTAAGGCAGAACCTCCAATTTACTATTTGCCTAAACAGCCATTGGAAAAAGATGCAACCTTGCTTGACCAGCAAAGA
GAACAGGTAACATTTTTAGAATGGAAGGCTGGTAGGAGAGATGAACTATCTGAATATCAGAAGCAGATCGGGGACCAGCAACTTAGCTATGTTGAAAAGG
AGTTGGAGAGGTGGCAAAATGCAGGAGAGCGAGCGATGATGCTTGAGCATGGTCCCAAGACAAGAAAGATACCTGGTGGAAGCAACAACAAAGAGGATGA
TGACGTGGAGGATATCAATGTTGGGGAGGATGACGTGATGGATGATGTGCTGGAGGTTGATGATCTGCAGGAGGGTTGA
AA sequence
>Potri.003G021900.2 pacid=42784896 polypeptide=Potri.003G021867.1.p locus=Potri.003G021900 ID=Potri.003G021900.2.v4.1 annot-version=v4.1
MVQYKHLAVEETEEELQREIDELYRQQRHITERLRDPRGLRRGGLSSAAAAAPRNFVANGARPRGFVRPADRNNAEDQPPAKRRLLSSVVKVEEDGESVE
DSATEEDAKNEQMGEDGNVGPATGIRGDGKPFKLQQSGWSRRDFDLRAVKRCVLCAFIFLPRALPKNQDPRLVSRNKRMLGQLLGTLEKFRKEDMKISGT
EAFIQRSNALQRAEQKAHEERERLRQQECEQIAEQRRRDLTLRARITVKAEEKKLELLFLRWNDHHKKLSNFIRTKAEPPIYYLPKQPLEKDATLLDQQR
EQVTFLEWKAGRRDELSEYQKQIGDQQLSYVEKELERWQNAGERAMMLEHGPKTRKIPGGSNNKEDDDVEDINVGEDDVMDDVLEVDDLQEG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G15200 protein-protein interaction re... Potri.003G021900
[exp]
0 1
AT5G58510 unknown protein Potri.001G280832
[exp]
2.82 0.7484
AT5G63460 SAP domain-containing protein ... Potri.015G094600
[exp]
6.24 0.7172
AT3G20240 Mitochondrial substrate carrie... Potri.010G253600
[exp]
6.32 0.6613
AT2G43465 RNA-binding ASCH domain protei... Potri.007G132100
[exp]
9.59 0.7163
AT4G27585 SPFH/Band 7/PHB domain-contain... Potri.012G011345
[exp]
10.81 0.6518
AT1G59610 DRP2B, CF1, ADL... Dynamin related protein 2B, dy... Potri.013G096701
[exp]
13.26 0.6875
AT1G18450 ATARP4 actin-related protein 4 (.1) Potri.015G053100
[exp]
14.38 0.6782 Pt-ARP4.1
AT5G23570 SGS3, ATSGS3 SUPPRESSOR OF GENE SILENCING 3... Potri.018G137400
[exp]
16.24 0.6375
AT3G14470 NB-ARC domain-containing disea... Potri.004G194800
[exp]
18.70 0.6897 RGA.63
AT2G21630 Sec23/Sec24 protein transport ... Potri.002G238500
[exp]
23.76 0.7085

Potri.003G021900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.