Plant FIBer expression Database

Potri.003G021934 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G01080 249 / 1e-83 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G208000
[exp]
296 / 5e-102 AT2G01080 241 / 2e-80 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Potri.001G163800
[exp]
68 / 1e-13 AT2G01080 55 / 6e-09 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Potri.006G112800
[exp]
44 / 4e-05 AT3G54200 159 / 7e-49 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036163
[exp]
277 / 3e-93 AT2G01080 267 / 2e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Lus10005728
[exp]
215 / 1e-67 AT2G01080 213 / 4e-67 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Lus10035612
[exp]
45 / 1e-05 AT3G54200 142 / 8e-42 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Lus10003238
[exp]
45 / 1e-05 AT3G54200 143 / 3e-42 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Lus10032932
[exp]
45 / 2e-05 AT5G53730 211 / 4e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Lus10036403
[exp]
41 / 0.0004 AT2G46150 156 / 8e-48 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0159 E-set PF03168 LEA_2 Late embryogenesis abundant protein
Representative CDS sequence
>Potri.003G021934.1 pacid=42785739 polypeptide=Potri.003G021934.1.p locus=Potri.003G021934 ID=Potri.003G021934.1.v4.1 annot-version=v4.1
ATGCCACCACATGGTCACCCCAGCAACGGCGAGAACCCTACAAGACAACGGCCACTACCACCGCATTCAAACCAGCAACAGCAGCACCACCACCCGTACT
ACTCATCGGCATCATCTTCGTCAGCTTCCTTCAAAGGGTGCTGTTGCTGCCTCTTCCTCCTCTTCTCCTTCCTGGCCCTCCTAATTTTGGCCGTCTTTCT
TGTCATAATCCTGGCCGTCAAACCCAAGAAACCCCAGTTCGATCTCCAGCAGGTTGGAGTCCAGTATATGGGCATTACCGCGTCTAATCCTACAGCCTCC
ATGGACCCCACAACCGCAACCACAACCACACCTGCCACTGCTTCTCTCTCCTTAACCATTCACATGCTGTTCACTGCTGTTAACCCGAACAAGGTAGGGA
TCAAGTACGGGGAGTCCAGTTTTACTGTCATGTACCGTGGGATTCCTTTAGGGAAAGCTTTGGTTCCTGGGTTTTATCAGGAAGCTCACAGCCAGCGACA
GGTGGAGGCCACCATATCCGTTGATCGGTATAGCTTGATGCAAGCTGATGCTTCTGATTTGATCAGGGATGCCTCGTTGAATGATCGTGTGGAGCTCAGG
GTTCTGGGTGAGGTTGGTGCCAAGATCCGTGTTCTAGACCTTGATTCGCCTGGTGTTCAGGTATCAGTGGATTGTGCAATAGTGATAAGTCCCAGAAAAC
AGTCTCTTACTTACAAGCAATGTGGATTTGATGGATTGAGTGTTTGA
AA sequence
>Potri.003G021934.1 pacid=42785739 polypeptide=Potri.003G021934.1.p locus=Potri.003G021934 ID=Potri.003G021934.1.v4.1 annot-version=v4.1
MPPHGHPSNGENPTRQRPLPPHSNQQQQHHHPYYSSASSSSASFKGCCCCLFLLFSFLALLILAVFLVIILAVKPKKPQFDLQQVGVQYMGITASNPTAS
MDPTTATTTTPATASLSLTIHMLFTAVNPNKVGIKYGESSFTVMYRGIPLGKALVPGFYQEAHSQRQVEATISVDRYSLMQADASDLIRDASLNDRVELR
VLGEVGAKIRVLDLDSPGVQVSVDCAIVISPRKQSLTYKQCGFDGLSV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G01080 Late embryogenesis abundant (L... Potri.003G021934
[exp]
0 1
AT3G11830 TCP-1/cpn60 chaperonin family ... Potri.004G195300
[exp]
3.60 0.7648
AT3G52210 S-adenosyl-L-methionine-depend... Potri.010G233100
[exp]
10.39 0.7608
AT1G24290 AAA-type ATPase family protein... Potri.011G023800
[exp]
16.34 0.7513
AT2G39020 Acyl-CoA N-acyltransferases (N... Potri.008G037700
[exp]
29.25 0.7437
AT2G26980 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.... Potri.009G021000
[exp]
30.49 0.6884 CIPK3.2
AT1G63250 DEA(D/H)-box RNA helicase fami... Potri.003G124100
[exp]
32.49 0.7212
AT5G56780 ATET2 ARABIDOPSIS EFFECTOR OF TRANSC... Potri.006G150000
[exp]
33.31 0.7364
AT5G63920 TOP3A, AtTOP3al... topoisomerase 3alpha (.1) Potri.005G067100
[exp]
41.85 0.6636
AT5G09995 unknown protein Potri.007G081800
[exp]
42.70 0.7299
AT4G38220 AQI aquaporin interactor, Peptidas... Potri.009G169300
[exp]
44.49 0.7289

Potri.003G021934 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.