Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16850 747 / 0 ATTERT telomerase reverse transcriptase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026080 [exp] 628 / 0 AT5G16850 433 / 1e-135 telomerase reverse transcriptase (.1) Lus10002308 [exp] 196 / 7e-56 AT5G16850 159 / 6e-44 telomerase reverse transcriptase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0027 [poplar] [flax] RdRP PF00078 [poplar] [flax] RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) CL0027 [poplar] [flax] PF12009 [poplar] [flax] Telomerase_RBD Telomerase ribonucleoprotein complex - RNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.003G022600.2 pacid=42786894 polypeptide=Potri.003G022600.2.p locus=Potri.003G022600 ID=Potri.003G022600.2.v4.1 annot-version=v4.1 ATGTCCAAAAAGAAGACGAAAGGAAGAGTCCCAGAAGTTTTATGGAGAGTATTCAGATATCGAGCTCGAACCCTAAGCAACACAGTGACATCCCTAATCG CTAATCCTCCATCATCATTTGTGCTCTTTAAGGCTGATGATCCCGCCAATTACCGGAAACTCCTTAAAGACTGCTACATCGTCCTCAGCGACAATGCACC TCCTGTGGCTCACTTCAATCTCGAAAACAGATGGCCTCAACCTCTTATCGTGAGCCGCATCATTGAGTTCATCATCACAGAACAACCTTTGTCGAATAAT GTTTTATGCAGCGGTTATGACAAGTGTCTTCGTTCAAGCCCCATTGCGGAGGTTTTGACGAGTTCAGTGTGGACCCTTTTGTTGGAAAGGGTTGGGGATG AATTTATGAATTACCTTTTGAAGTATTCGTCAATGTTTTTGCCATTGCCTCGTCAGCAACACCAGCAGGTGGCAGGTCCTCCTATCACTGATCTTGTCTT TCAGTCGTCTCGGAGGAAGGGGCACTCCCCCAATCTTGTTGGGCTTAAGAGGAAGAGGGATTGGGATGATAAGGCTGCTGATGCTGCTAGCTTAATGCTT AAAAGACACCAACTTACTGCTGATGCTTCCTTAAGTTATGATAGGACGACATATCCTGTTATTGATTTTGATCAGGACAAGGGTTTATCTGAAAAAACTG GAGTTGCTGCTGTTAACCGTGAAGGGCATTCGAATGAAAAACTTCCAGGCTTGTATCAGTGTACATTGAGATCCAGGAAGCCATTTGGGTGGCAGCGACG CCGCTGCAAAAAGCAGAGGTCTTTGGATGCTAAAGAAACTGATGGTAAGACTTGTTACATTATGAATGAAGGTAGCTCACCTGAGAGGCTTCCGCTTGAA TTCAGGAACAGTTCAAGCCCTGGAAAGCTGCAGGTGCTGCCACAATGCTGTTGTCATCTTGTGTTACAAGCTCCTAACATGAAAGGTGTACAGATTGATA GGCGGCCAATATTTTATAATTCAAAACATCCTTCATCAATGCTTCCAAAAAACCATGTACTGATGTGCTTGAAGCCTAATTTGATTGGTTCAAAGTCTCT TATTCGGAGTATTTTTGGCCTATCTGATGAAGATGTAAGTGCTCCGTCAATGCCACTTTCCTACAGCAAAGACTTTTGTCTCTTGGGATCCACATGCCTG TACCATTCCCTTGTTAAATTGGTTAAGGTTCTTGTAAGACAAACTCAATGCTGCAAGTATGCAAGATTAATACATAGGCACTGCTTTGTTTCATCATCGA ATCAAAATGCCATAGAAAATTCAAACTCGGTGTTTGAGGGGTGTAATTTGGAGAGAGAATTCTCTGGGAAATCACATGCTGTTGTTAATGAACGCCGTGA TAAAACTCTGGAAACAACTGATCATCAGATAGTGACACTAAAATCTTATTGCTCAAAAAGTCAGGTTGTGTCATTTATATGGGCTGTTTGTAGAAATGCA GTCCCTCCTGAGTTGCTAGGAAATCATGTCAACCGAAGAATCCTAAGGAGAAATTTAGCAAAATTTATTTGGCTCAGAAAGTTCGAAAAATTCTCACTGA AGCAATGTATGCATAAGTTGAAGACTTCTGGGTTTCCGTTTGTGTCAGACAAACACTGTTCATGCTTCTTGGATACTCATATGCTGAATAATATGCCAGG TCATACTGCAGGCTTGCATAAGGATTTATATAAATGGAATGGTGCTGCAAATGATTTGAAACACCTACTTGTACAGAAATGGATATATTGGTTCTTTTCA TCTCTGGTTGTGCCATTGGTACAAGCCAACTTCTATGTAACTGAAAGTGAGCATGGGAAACATGAAATCTATTATTACAGGAAGTCAATTTGGGAGAAAT TAAGAAATAGAGCCATTTCTTGCTTGAAAGACCAGAACTATCAGTGCTTGGATGAAGCTAGTGCTGAAAGTATCACAGGCTGTAGGTTGTTTGGTTTCTC AAAGCTCAGGCTTCTTCCAAAGAAAAATGGAATAAGGATGATAGCAAATCTTAAAGCATCATCAAAAATGCCTAAAAAATCCACTTCTGAACTCCAGTCA TTTCGAATGCAGAGAAAAAAACAATTCATTACCAAGGTGGTCAAATGTGAACATTTTAAGTCTGTAAATTGCGTTCTACGTGAAACACATGCTGTTCTGA AAGGTATACAGTTGAAAGAACCAGACAAGCTAGGGTCATCAGTGTTTGACTATAATGATATCTACCGAAAGTTATGCCAGTTTAAAATTTGTTTGAATAA AAGATCGAATATCATGCCTGATGTGTTCATTGTTGTTTCTGATGTATCCAAAGCATTTGATTCCATAGATCAGGACAAGTTGCTTTGTGTCATGGAAGAT GTCATATATGAGGATCAATATCTTCTAAAGCGATTTTGTCAAGTTGTCAGCACTAAAAAATCTTTGTGGGCGCATGAGCGCCTTATGTCAAGAGATCAAA ACATCACCACTGGTCTTACAAGATTCAGTTCTTCTCTCCACTTTGGTTCATTGCATACTGTCCTTGTTAATCAGGGGCGCAGTAGGTATCTGAAAAGGGA ACAACTCCTGTCCAATCTCACTGAGCATGTGAAGCGCAATGTTCTTCAGTTTGATGATAAGTTTTACTTGCAAAGAAAAGGTATACCTCAAGGAAGCATT TTGTCTTCCCTGCTTTGCTCATTATACTATGGGCACCTTGAAAGGAATGTGATCTTTCCTTTTCTTGAAGATCTATCAAGAAGACATTGCTATCAGGATG CCTCTGCTATAGGAAGTAGCAGTAGGGATAAAGTCATCTCATCTCCTCATTACATGCTTCTTAGGTTCATTGATGATTTTCTTTTTATATCAACATCTAA AAAGCAGGCTGCTGGCCTTTTCTCTCAGTTAAGGAGTGGATTTAGGGATTATAACTGCTTCATGAATGAGGAAAAGTTTTGTCTTAATTTGGATACTGAA CAAGTATCAGGGCTTCAGTCAAACAAGCTCTATGTTGGTGGGGATGGTATCTCCTTTCTTCGATGGAGTGGCTTGCTTTTAAACTCGTGCACTTTAGAAG TCCAGGCAGATTATACGAGGTATCTGAACAACCATTTAAACTCTACTCTTACTGTCTGCTGGCAAGGTAAACCTTGTCAACATCTAGAGAGGAAGCTGTG GAACTTCATGAGACCTAAGTGCCATCCCATATTCTTCGATTCTAATATAAACTCAGCACCTGTTGTCAGATTAAACATCTACCAAGCATTTTTGTTATGT GCAATGAAGTTCCATTGTTATGTCTCTAGCATGTCGTTCCACTGCCATCTGAGTGCAACATTCTACGCAAACATGATTGAAAGGTCCTTGAGGTATATGT ATGTTCTCATAAAGAGAAGGATGCGTTCTATGCACCTTGGATCTTGTTTCCACCCAATTCTTCAATTGGAGGTCGGAGAAGTTGAATGGCTTGGGTTGAC TGCCTATATCCAAGTGCTGAAGAGAAAACAATCGCGGTATAAGGAGTTGCTCTCTCGATTGAGTTTGAAGTTATCAAAACATAGAATAGGCGGGAGTACA TCGTCTCATCTAAAATATGCAGTTGATAGCTCCCACTCCTCTTTACTTTGGAAAATCAAGTATTAG
AA sequence Show only first row Show all	>Potri.003G022600.2 pacid=42786894 polypeptide=Potri.003G022600.2.p locus=Potri.003G022600 ID=Potri.003G022600.2.v4.1 annot-version=v4.1 MSKKKTKGRVPEVLWRVFRYRARTLSNTVTSLIANPPSSFVLFKADDPANYRKLLKDCYIVLSDNAPPVAHFNLENRWPQPLIVSRIIEFIITEQPLSNN VLCSGYDKCLRSSPIAEVLTSSVWTLLLERVGDEFMNYLLKYSSMFLPLPRQQHQQVAGPPITDLVFQSSRRKGHSPNLVGLKRKRDWDDKAADAASLML KRHQLTADASLSYDRTTYPVIDFDQDKGLSEKTGVAAVNREGHSNEKLPGLYQCTLRSRKPFGWQRRRCKKQRSLDAKETDGKTCYIMNEGSSPERLPLE FRNSSSPGKLQVLPQCCCHLVLQAPNMKGVQIDRRPIFYNSKHPSSMLPKNHVLMCLKPNLIGSKSLIRSIFGLSDEDVSAPSMPLSYSKDFCLLGSTCL YHSLVKLVKVLVRQTQCCKYARLIHRHCFVSSSNQNAIENSNSVFEGCNLEREFSGKSHAVVNERRDKTLETTDHQIVTLKSYCSKSQVVSFIWAVCRNA VPPELLGNHVNRRILRRNLAKFIWLRKFEKFSLKQCMHKLKTSGFPFVSDKHCSCFLDTHMLNNMPGHTAGLHKDLYKWNGAANDLKHLLVQKWIYWFFS SLVVPLVQANFYVTESEHGKHEIYYYRKSIWEKLRNRAISCLKDQNYQCLDEASAESITGCRLFGFSKLRLLPKKNGIRMIANLKASSKMPKKSTSELQS FRMQRKKQFITKVVKCEHFKSVNCVLRETHAVLKGIQLKEPDKLGSSVFDYNDIYRKLCQFKICLNKRSNIMPDVFIVVSDVSKAFDSIDQDKLLCVMED VIYEDQYLLKRFCQVVSTKKSLWAHERLMSRDQNITTGLTRFSSSLHFGSLHTVLVNQGRSRYLKREQLLSNLTEHVKRNVLQFDDKFYLQRKGIPQGSI LSSLLCSLYYGHLERNVIFPFLEDLSRRHCYQDASAIGSSSRDKVISSPHYMLLRFIDDFLFISTSKKQAAGLFSQLRSGFRDYNCFMNEEKFCLNLDTE QVSGLQSNKLYVGGDGISFLRWSGLLLNSCTLEVQADYTRYLNNHLNSTLTVCWQGKPCQHLERKLWNFMRPKCHPIFFDSNINSAPVVRLNIYQAFLLC AMKFHCYVSSMSFHCHLSATFYANMIERSLRYMYVLIKRRMRSMHLGSCFHPILQLEVGEVEWLGLTAYIQVLKRKQSRYKELLSRLSLKLSKHRIGGST SSHLKYAVDSSHSSLLWKIKY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16850		ATTERT	telomerase reverse transcripta...		Potri.003G022600 [exp]	0	1
AT5G11800		ATKEA6, KEA6	K+ efflux antiporter 6, ARABID...		Potri.018G054100 [exp]	9.48	0.8140	ATKEA4.2
AT2G39870			unknown protein		Potri.008G062200 [exp]	9.48	0.7508
AT2G29890		ATVLN1, VLN1	villin 1, villin-like 1 (.1.2....		Potri.009G045000 [exp]	10.19	0.8080	VLN1.1
AT1G04160		XI-B, XI-8, ATX...	MYOSIN XI-8, ARABIDOPSIS THALI...		Potri.002G254300 [exp]	13.41	0.8064	XIB.1
AT4G23640		ATKT3, KUP4, TR...	TINY ROOT HAIR 1, Potassium tr...		Potri.003G133900 [exp]	13.85	0.7293
AT4G27640			ARM repeat superfamily protein...		Potri.008G085800 [exp]	17.94	0.7719
AT5G23630		PDR2, MIA	PI DEFICIENCY RESPONSE 2, MALE...		Potri.004G137100 [exp]	22.84	0.7763
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Potri.003G038800 [exp]	24.14	0.7922	Pt-ATMSI4.2,NFC907
AT1G63640			P-loop nucleoside triphosphate...		Potri.003G127800 [exp]	29.22	0.8032
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Potri.001G214800 [exp]	30.00	0.8075

Compare expression of checked genes

Potri.003G022600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.