Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	XYL4.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64570 1139 / 0 ATBXL4, XYL4 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) AT5G09730 1059 / 0 ATBXL3, XYL3, BXL3, ATBX3 beta-xylosidase 3 (.1) AT3G19620 804 / 0 Glycosyl hydrolase family protein (.1) AT5G49360 801 / 0 ATBXL1, BXL1 beta-xylosidase 1 (.1) AT1G02640 782 / 0 ATBXL2, BXL2 beta-xylosidase 2 (.1) AT5G10560 696 / 0 Glycosyl hydrolase family protein (.1) AT1G78060 667 / 0 Glycosyl hydrolase family protein (.1) AT5G09700 616 / 0 Glycosyl hydrolase family protein (.1) AT3G47000 117 / 5e-27 Glycosyl hydrolase family protein (.1) AT3G47050 114 / 3e-26 Glycosyl hydrolase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G206800 [exp] 1337 / 0 AT5G64570 1168 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Potri.010G141400 [exp] 854 / 0 AT5G49360 1113 / 0.0 beta-xylosidase 1 (.1) Potri.002G197200 [exp] 848 / 0 AT1G02640 1189 / 0.0 beta-xylosidase 2 (.1) Potri.014G122200 [exp] 840 / 0 AT1G02640 1154 / 0.0 beta-xylosidase 2 (.1) Potri.008G108100 [exp] 836 / 0 AT5G49360 1104 / 0.0 beta-xylosidase 1 (.1) Potri.001G294700 [exp] 781 / 0 AT3G19620 1080 / 0.0 Glycosyl hydrolase family protein (.1) Potri.002G094000 [exp] 729 / 0 AT1G78060 1077 / 0.0 Glycosyl hydrolase family protein (.1) Potri.005G168500 [exp] 727 / 0 AT1G78060 1069 / 0.0 Glycosyl hydrolase family protein (.1) Potri.007G114300 [exp] 709 / 0 AT3G19620 776 / 0.0 Glycosyl hydrolase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020966 [exp] 1186 / 0 AT5G64570 1181 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Lus10010015 [exp] 812 / 0 AT1G02640 1148 / 0.0 beta-xylosidase 2 (.1) Lus10022374 [exp] 724 / 0 AT1G78060 1065 / 0.0 Glycosyl hydrolase family protein (.1) Lus10016858 [exp] 717 / 0 AT5G49360 922 / 0.0 beta-xylosidase 1 (.1) Lus10019099 [exp] 709 / 0 AT1G78060 1007 / 0.0 Glycosyl hydrolase family protein (.1) Lus10004271 [exp] 683 / 0 AT5G10560 989 / 0.0 Glycosyl hydrolase family protein (.1) Lus10007775 [exp] 471 / 2e-158 AT1G78060 725 / 0.0 Glycosyl hydrolase family protein (.1) Lus10019240 [exp] 241 / 2e-70 AT5G10560 407 / 1e-133 Glycosyl hydrolase family protein (.1) Lus10037728 [exp] 159 / 3e-45 AT5G49360 177 / 1e-52 beta-xylosidase 1 (.1) Lus10022413 [exp] 118 / 3e-27 AT5G20950 837 / 0.0 Glycosyl hydrolase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00933 [poplar] [flax] Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain CL0058 [poplar] [flax] PF01915 [poplar] [flax] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain CL0159 [poplar] [flax] E-set PF14310 [poplar] [flax] Fn3-like Fibronectin type III-like domain
Representative CDS sequence Show only first row Show all	>Potri.003G022900.1 pacid=42785146 polypeptide=Potri.003G022900.1.p locus=Potri.003G022900 ID=Potri.003G022900.1.v4.1 annot-version=v4.1 ATGGCCATGGCCTCAGTATCTCCTCAAAACAGCGTACCTAAGGTCCCTGTTTTTCTTTTGTTTTGTATGTTCTTAGTGTTTTTGTCGACCCATGTTTCGG CACAATCATCACCTGTTTTTGCATGTGATGTTGTGAGCAATCCATCTTTGGCAAGTTTAGGGTTTTGTAACACGTCTATAGGGATCAATGACAGAGTTGT GGACCTGGTAAAAAGACTCACATTGCAAGAAAAGATAGTGTTCTTGGTGAATAGCGCAGGGAATGTGAGCAGACTTGGTATACCAAAGTACGAGTGGTGG TCTGAGGCTTTACATGGAGTCTCCTACGTGGGTCCAGGCACACATTTCTCTGACGATGTAGCTGGAGCTACCAGCTTCCCTCAGGTCATCCTCACCGCTG CGTCCTTTAACACCTCTCTCTTTGAAGCCATTGGAAAGGTTGTTTCAACGGAAGCAAGAGCAATGTACAACGTGGGATTGGCAGGATTGACATTTTGGTC ACCTAATATAAACATATTTCGAGACCCCAGGTGGGGGAGAGGCCAGGAAACTCCAGGGGAGGACCCGTTGCTCTCAAGCAAGTATGGATCATGTTATGTT AAAGGACTGCAACAAAGAGATGATGGCGACCCAGATAAACTTAAGGTTGCTGCTTGCTGTAAACATTACACCGCCTATGATTTGGATAACTGGAAAGGGA GTGATCGTTACCATTTCAATGCTGTGGTGACAAAGCAAGATATGGATGATACGTTTCAACCACCATTCAAAAGTTGTGTGATTGATGGGAATGTTGCTAG TGTTATGTGTTCTTACAACCAGGTTAACGGTAAACCTACCTGTGCTGACCCAGACCTCCTCTCTGGTGTCATCAGAGGGGAATGGAACTTGAATGGATAT ATTGTTACTGACTGTGATTCATTAGATGTGTTCTATAAGTCCCAAAATTATACCAAAACACCAGAAGAAGCTGCAGCTGCTGCTATATTGGCAGGGGTGG ACCTCAACTGTGGATCTTTCTTGGGCCAACACACTGAAGCAGCAGTAAAGGGAGGACTTGTGAATGAGCATGCCATTGATATAGCAGTCTCAAACAATTT TGCCACTTTGATGCGGCTTGGATTCTTCGATGGCGATCCCAGCAAACAACTTTATGGTAAGCTAGGACCAAAAGATGTATGTACAGCAGAGAATCAGGAG CTGGCCCGTGAAGCTGCCAGGCAAGGAATTGTGTTGCTTAAGAACACTGCAGGATCACTGCCTCTATCTCCCACAGCCATAAAAAACTTGGCAGTAATTG GACCAAATGCCAATGTCACTAAGACGATGATCGGAAACTATGAAGGTACCCCCTGCAAGTATACGACCCCTTTACAAGGACTAGCAGCTTCTGTTGCAAC AACATATCTACCTGGCTGCTCTAACGTAGCATGCAGCACTGCTCAAGTAGATGATGCCAAGAAACTAGCAGCCGCAGCTGATGCCACGGTGCTTGTAATG GGTGCCGATCTATCTATAGAAGCAGAGAGTCGTGACAGGGTGGACGTTCTTCTTCCAGGACAGCAGCAACTTTTGATAACAGCAGTTGCAAATGTTTCAT GTGGACCTGTAATTCTTGTTATAATGTCTGGAGGGGGCATGGACGTATCGTTCGCAAGAACTAATGACAAAATCACAAGTATCCTATGGGTTGGCTACCC TGGAGAAGCAGGTGGAGCTGCCATAGCTGATATTATTTTTGGTTACTATAATCCAAGTGGAAGACTACCGATGACATGGTATCCACAATCATATGTTGAC AAAGTACCAATGACAAATATGAACATGAGGCCAGATCCTTCCAATGGCTACCCTGGCAGAACCTACAGGTTCTACACAGGAGAAACTGTTTACTCATTTG GAGATGGACTAAGCTATTCCCAATTCACCCACGAGCTAATCCAGGCGCCTCAACTAGTATATGTTCCTTTAGAGGAAAGTCATGTCTGTCACTCTTCAGA ATGCCAATCAGTTGTTGCCTCTGAACAGACCTGTCAGAACTCAACATTTGATATGCTTCTGAGAGTTAAGAATGAGGGAACAATAAGTGGAAGCCATACA GTTTTCTTGTTCTCTAGTCCCCCAGCAGTGCACAACTCACCACAGAAGCATTTGGTGGGGTTTGAGAAGGTCTTCTTGAATGCACAAACAGGTAGACATG TGAGATTTAAGGTGGATATTTGTAAGGATTTGAGCGTGGTTGATGAGCTAGGAAGCAAGAAAGTTGCCTTGGGAGAACACGTTCTTCATGTTGGAAGCTT GAAACACTTCTTGTCTGTAAGGATTTGA
AA sequence Show only first row Show all	>Potri.003G022900.1 pacid=42785146 polypeptide=Potri.003G022900.1.p locus=Potri.003G022900 ID=Potri.003G022900.1.v4.1 annot-version=v4.1 MAMASVSPQNSVPKVPVFLLFCMFLVFLSTHVSAQSSPVFACDVVSNPSLASLGFCNTSIGINDRVVDLVKRLTLQEKIVFLVNSAGNVSRLGIPKYEWW SEALHGVSYVGPGTHFSDDVAGATSFPQVILTAASFNTSLFEAIGKVVSTEARAMYNVGLAGLTFWSPNINIFRDPRWGRGQETPGEDPLLSSKYGSCYV KGLQQRDDGDPDKLKVAACCKHYTAYDLDNWKGSDRYHFNAVVTKQDMDDTFQPPFKSCVIDGNVASVMCSYNQVNGKPTCADPDLLSGVIRGEWNLNGY IVTDCDSLDVFYKSQNYTKTPEEAAAAAILAGVDLNCGSFLGQHTEAAVKGGLVNEHAIDIAVSNNFATLMRLGFFDGDPSKQLYGKLGPKDVCTAENQE LAREAARQGIVLLKNTAGSLPLSPTAIKNLAVIGPNANVTKTMIGNYEGTPCKYTTPLQGLAASVATTYLPGCSNVACSTAQVDDAKKLAAAADATVLVM GADLSIEAESRDRVDVLLPGQQQLLITAVANVSCGPVILVIMSGGGMDVSFARTNDKITSILWVGYPGEAGGAAIADIIFGYYNPSGRLPMTWYPQSYVD KVPMTNMNMRPDPSNGYPGRTYRFYTGETVYSFGDGLSYSQFTHELIQAPQLVYVPLEESHVCHSSECQSVVASEQTCQNSTFDMLLRVKNEGTISGSHT VFLFSSPPAVHNSPQKHLVGFEKVFLNAQTGRHVRFKVDICKDLSVVDELGSKKVALGEHVLHVGSLKHFLSVRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64570		ATBXL4, XYL4	ARABIDOPSIS THALIANA BETA-D-XY...		Potri.003G022900 [exp]	0	1	XYL4.3
AT3G12110		ACT11	actin-11 (.1)		Potri.010G204300 [exp]	4.58	0.9383	ACT5,Pt-PEAC14.3
AT1G52360			Coatomer, beta' subunit (.1.2)		Potri.003G056300 [exp]	8.48	0.9258
AT3G54770			RNA-binding (RRM/RBD/RNP motif...		Potri.010G216800 [exp]	8.66	0.9183
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Potri.013G123600 [exp]	8.83	0.9287	Pt-RAB11.8
AT1G01690		ATPRD3	ARABIDOPSIS THALIANA PUTATIVE ...		Potri.002G160100 [exp]	9.38	0.9113
AT3G21770			Peroxidase superfamily protein...		Potri.014G135580 [exp]	12.32	0.8932
AT5G56540		ATAGP14, AGP14	arabinogalactan protein 14 (.1...		Potri.013G057500 [exp]	13.07	0.9127
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Potri.013G018800 [exp]	13.19	0.9295
AT1G01510		AN	ANGUSTIFOLIA, NAD(P)-binding R...		Potri.014G089400 [exp]	15.29	0.8999
AT5G58970		ATUCP2	uncoupling protein 2 (.1.2)		Potri.001G247800 [exp]	16.43	0.9181	Pt-UCP2.1

Compare expression of checked genes

Potri.003G022900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.