Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33430 962 / 0 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT2G13790 879 / 0 BAK7, BKK1, ATSERK4 BAK1-LIKE 1, BRI1- ASSOCIATED KINASE 7, somatic embryogenesis receptor-like kinase 4 (.1) AT2G13800 808 / 0 BAK8, ATSERK5 BRI1- ASSOCIATED KINASE 8, SOMATIC EMBRYOGENESIS RECEPTOR LIKE KINASE 5, somatic embryogenesis receptor-like kinase 5 (.1) AT1G71830 665 / 0 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT1G34210 660 / 0 ATSERK2, SERK2 somatic embryogenesis receptor-like kinase 2 (.1) AT5G10290 587 / 0 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G16000 582 / 0 NIK1 NSP-interacting kinase 1 (.1) AT3G25560 575 / 0 NIK2 NSP-interacting kinase 2 (.1.2.3) AT5G65240 565 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT2G23950 526 / 0 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G206700 [exp] 1048 / 0 AT4G33430 927 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Potri.019G087700 [exp] 674 / 0 AT1G34210 1012 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.013G117200 [exp] 672 / 0 AT1G34210 1013 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.007G082400 [exp] 654 / 0 AT1G34210 954 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.005G083300 [exp] 652 / 0 AT1G71830 981 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Potri.007G094500 [exp] 598 / 0 AT5G10290 837 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.017G108000 [exp] 596 / 0 AT5G16000 995 / 0.0 NSP-interacting kinase 1 (.1) Potri.004G108200 [exp] 593 / 0 AT5G16000 1006 / 0.0 NSP-interacting kinase 1 (.1) Potri.005G074200 [exp] 575 / 0 AT5G10290 855 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020962 [exp] 1004 / 0 AT4G33430 989 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Lus10006057 [exp] 672 / 0 AT1G71830 954 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10028716 [exp] 670 / 0 AT1G71830 1000 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10006056 [exp] 643 / 0 AT1G71830 731 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10000629 [exp] 582 / 0 AT5G10290 914 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10030898 [exp] 578 / 0 AT1G60800 931 / 0.0 NSP-interacting kinase 3 (.1) Lus10034350 [exp] 574 / 0 AT5G16000 1018 / 0.0 NSP-interacting kinase 1 (.1) Lus10030591 [exp] 573 / 0 AT1G60800 929 / 0.0 NSP-interacting kinase 3 (.1) Lus10025358 [exp] 528 / 0 AT4G33430 500 / 2e-176 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Lus10005103 [exp] 527 / 0 AT5G16000 998 / 0.0 NSP-interacting kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.003G023000.2 pacid=42786367 polypeptide=Potri.003G023000.2.p locus=Potri.003G023000 ID=Potri.003G023000.2.v4.1 annot-version=v4.1 ATGTGGGAGATCTGGAGCTCGGCTTTCTTTTTGCTGTTTCATTTGGTGTTAGGGGTATCCGGTAATGTAGAAGGCGATGCCCTGAACGCATTAAGGACGA ATTTAGCTGATCCGGGTAATGTTCTTCAGAGTTGGGATCCTACTCTTGTCAATCCCTGCACCTGGTTTCATGTTACATGCAATAGTGAAAATAGCGTCAC GCGTGTTGATCTTGGAAATGCAAATCTATCTGGTCCACTGGTTACACAACTTGGTAACCTACCGAATTTGCAATACTTGGAACTTTACAGCAATAACATA AGTGGAAAAATTCCAGATGAGCTTGGGAATCTGACAAACTTGGTGAGCTTGGATCTTTACTTGAACAACTTACAGGGTCAGATTCCAAAGACGTTGGGCC AGCTTCAGAAACTCCGTTTCTTGCGTCTCAACAACAACACCTTGTCGGGAACAATTCCTATGAATTTAACTACGGTTACCTCCTTGCAAGTCCTGGATCT TTCTAACAACGAACTAACAGGAGATATTCCTACCAATGGCTCATTCTCTTTATTCACGCCTATAAGTTTTAACGGTAATAAACTTAATCCTCTTCCAGCT TCTCCGCCACCTTCTCTTACTCCACCACCGGGCGCTTCTAATGGGAATAGTGCCATTGGAGCTATTGCTGGAGGAGTTGCTGCTGGTGCTGCCCTGCTGT TTGCTGGCCCTGCAATTGTACTTGCTTATTGGCGTCGTAGAAAACCACAGGACCATTTCTTTGATGTACCTGCTGAAGAGGACCCAGAAGTTCATCTTGG ACAGCTTAAAAGGTTTTCTCTGCGTGAGCTACAAGTTGCAACTGACAATTTTAGTTCCAAAAACATTTTGGGCAGAGGTGGATTTGGAAAGGTTTATAAA GGACGTTTAGCTGATGGTTCTCTAGCAGCTGTTAAAAGACTGAAAGAGGAGCGCACCCAGGGAGGGGAACTGCAGTTTCAGACAGAAGTTGAGATGATCA GCATGGCTGTGCATCGAAACTTGCTTCGTCTACAAGGATTTTGCATGACTCCAACTGAGCGGTTGCTTGTTTATCCTTTTATGGTTAATGGAAGTGTAGC ATCATGTTTAAGAGAGCGTACAGAATCACAACCCCCTCTTGATTGGCCAAAAAGGAAGCGAATTGCATTAGGATCTGCCCGAGGGCTGGCTTATTTGCAT GATCATTGTGATCCGAAGATTATTCACCGTGATGTGAAAGCTGCAAATATATTGTTAGATGAGGAATTTGAAGCAGTTGTTGGAGATTTTGGGTTGGCAA AACTCATGGATTACAAAGATACTCATGTTACTACTGCAGTACGTGGCACAATAGGGCATATAGCACCCGAGTACCTATCAACAGGAAAGTCTTCAGAGAA GACTGATGTTTTTGGGTATGGAGTCATGCTTCTTGAACTTATTACTGGACAAAGGGCTTTTGATCTTGCTCGGCTTGCAAACGATGACGATGTGATGTTA CTTGATTGGGTGAAGGGACTTCTAAAAGATAAGAAGTTGGAGATGCTGGTTGATGCTGATCTTCAGGGAATTTACACGGATGATGAGGTTGAGCAACTGA TCCAAGTTGCTCTACTGTGTACACAAAGCTCCCCAATGGAACGACCCAAGATGTCAGAGGTGGTCAGAATGCTTGAAGGGGATGGATTGGCGGAGAGATG GGAGGAATGGCAGAAAGAGGAGATTTTCCGCCAAGAGTTTAACCACACTCACCACCCAAACACTAATTGGATCGTAGACTCCTCATCCCACATCCCTCCA GATGAATTGTCCGGACCCAGATGA
AA sequence Show only first row Show all	>Potri.003G023000.2 pacid=42786367 polypeptide=Potri.003G023000.2.p locus=Potri.003G023000 ID=Potri.003G023000.2.v4.1 annot-version=v4.1 MWEIWSSAFFLLFHLVLGVSGNVEGDALNALRTNLADPGNVLQSWDPTLVNPCTWFHVTCNSENSVTRVDLGNANLSGPLVTQLGNLPNLQYLELYSNNI SGKIPDELGNLTNLVSLDLYLNNLQGQIPKTLGQLQKLRFLRLNNNTLSGTIPMNLTTVTSLQVLDLSNNELTGDIPTNGSFSLFTPISFNGNKLNPLPA SPPPSLTPPPGASNGNSAIGAIAGGVAAGAALLFAGPAIVLAYWRRRKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSSKNILGRGGFGKVYK GRLADGSLAAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLQGFCMTPTERLLVYPFMVNGSVASCLRERTESQPPLDWPKRKRIALGSARGLAYLH DHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVML LDWVKGLLKDKKLEMLVDADLQGIYTDDEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDGLAERWEEWQKEEIFRQEFNHTHHPNTNWIVDSSSHIPP DELSGPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Potri.003G023000 [exp]	0	1
AT1G25390			Protein kinase superfamily pro...		Potri.010G121100 [exp]	8.77	0.9145
AT4G33920			Protein phosphatase 2C family ...		Potri.007G051900 [exp]	10.00	0.9072
AT5G38260			Protein kinase superfamily pro...		Potri.017G117010 [exp]	10.53	0.9086
AT3G11080		AtRLP35	receptor like protein 35 (.1)		Potri.012G028101 [exp]	10.72	0.9034
AT1G18980			RmlC-like cupins superfamily p...		Potri.015G068200 [exp]	14.28	0.9020
AT5G38210			Protein kinase family protein ...		Potri.004G097100 [exp]	19.39	0.8984
AT1G25390			Protein kinase superfamily pro...		Potri.010G121400 [exp]	21.81	0.8936
AT1G25390			Protein kinase superfamily pro...		Potri.010G121025 [exp]	29.69	0.8965
AT3G22370		AtHSR3, ATAOX1A...	hyper-sensitivity-related 3, a...		Potri.015G019800 [exp]	30.65	0.8959
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Potri.006G022000 [exp]	31.98	0.8958

Compare expression of checked genes

Potri.003G023000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.